miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7771 5' -55 NC_001973.1 + 73716 0.66 0.938737
Target:  5'- --gGGCG-CGCCGuCGUAAAAGcUGAu -3'
miRNA:   3'- ccgCCGCgGCGGC-GCAUUUUCaACUu -5'
7771 5' -55 NC_001973.1 + 5987 0.66 0.935809
Target:  5'- cGCGGCGCgGUCGCGUuucgaccgGAc -3'
miRNA:   3'- cCGCCGCGgCGGCGCAuuuucaa-CUu -5'
7771 5' -55 NC_001973.1 + 115431 0.66 0.928636
Target:  5'- uGGUGGCGCgCGaCCGUugGUAcAAGggGGAc -3'
miRNA:   3'- -CCGCCGCG-GC-GGCG--CAUuUUCaaCUU- -5'
7771 5' -55 NC_001973.1 + 80079 0.66 0.928636
Target:  5'- uGCGGCGCUugGCCGuCGUcGAGGUc--- -3'
miRNA:   3'- cCGCCGCGG--CGGC-GCAuUUUCAacuu -5'
7771 5' -55 NC_001973.1 + 105494 0.66 0.917559
Target:  5'- gGGC-GCGuuGCCGcCGU---AGUUGAGg -3'
miRNA:   3'- -CCGcCGCggCGGC-GCAuuuUCAACUU- -5'
7771 5' -55 NC_001973.1 + 21690 0.66 0.917559
Target:  5'- gGGauGCGCCGCCGuCGgcu-GGUcGAAg -3'
miRNA:   3'- -CCgcCGCGGCGGC-GCauuuUCAaCUU- -5'
7771 5' -55 NC_001973.1 + 117636 0.66 0.917559
Target:  5'- uGCGGCGCCGCCGaccagcAGgcGGu -3'
miRNA:   3'- cCGCCGCGGCGGCgcauuuUCaaCUu -5'
7771 5' -55 NC_001973.1 + 132566 0.67 0.911656
Target:  5'- cGGCGGUGUggcgCGCCGUGUAuuuuagGAAa -3'
miRNA:   3'- -CCGCCGCG----GCGGCGCAUuuucaaCUU- -5'
7771 5' -55 NC_001973.1 + 122544 0.67 0.911656
Target:  5'- cGGCGGCGgCGCUG-GUGGuGGUggUGGu -3'
miRNA:   3'- -CCGCCGCgGCGGCgCAUUuUCA--ACUu -5'
7771 5' -55 NC_001973.1 + 91557 0.67 0.905512
Target:  5'- cGGCGGCGUCGCacgcuuguCGCGau-GAGcuuUUGAAa -3'
miRNA:   3'- -CCGCCGCGGCG--------GCGCauuUUC---AACUU- -5'
7771 5' -55 NC_001973.1 + 67610 0.67 0.899128
Target:  5'- uGGCGGCggagcugguGCCgGCCGCGUccGAGAGcgUGc- -3'
miRNA:   3'- -CCGCCG---------CGG-CGGCGCA--UUUUCa-ACuu -5'
7771 5' -55 NC_001973.1 + 7843 0.67 0.885655
Target:  5'- gGGCGGCGCCGCgCcCGUc-GAGcUGGc -3'
miRNA:   3'- -CCGCCGCGGCG-GcGCAuuUUCaACUu -5'
7771 5' -55 NC_001973.1 + 133532 0.67 0.885655
Target:  5'- aGGCGaGgGCCG-CGCGUAAucguAGUUGc- -3'
miRNA:   3'- -CCGC-CgCGGCgGCGCAUUu---UCAACuu -5'
7771 5' -55 NC_001973.1 + 119209 0.68 0.871267
Target:  5'- cGGCGGCucGCC-CUGCGUcGAGGUcGAc -3'
miRNA:   3'- -CCGCCG--CGGcGGCGCAuUUUCAaCUu -5'
7771 5' -55 NC_001973.1 + 72830 0.68 0.871267
Target:  5'- aGGcCGGCgGCCGCCGCGc---AGUccgaUGGAc -3'
miRNA:   3'- -CC-GCCG-CGGCGGCGCauuuUCA----ACUU- -5'
7771 5' -55 NC_001973.1 + 160184 0.68 0.863743
Target:  5'- gGGCGGgGCUGuaGUuGUAAAAGUUGu- -3'
miRNA:   3'- -CCGCCgCGGCggCG-CAUUUUCAACuu -5'
7771 5' -55 NC_001973.1 + 119321 0.68 0.856005
Target:  5'- gGGuCGGCGcCCGCCGCG----AGUUcGAu -3'
miRNA:   3'- -CC-GCCGC-GGCGGCGCauuuUCAA-CUu -5'
7771 5' -55 NC_001973.1 + 122619 0.68 0.84074
Target:  5'- cGGCGGCGCCGaCGCGggcgccggcgucGGUcGAGa -3'
miRNA:   3'- -CCGCCGCGGCgGCGCauuu--------UCAaCUU- -5'
7771 5' -55 NC_001973.1 + 4166 0.69 0.796463
Target:  5'- cGGUGGgucCGUCGCCGCGcau--GUUGAAa -3'
miRNA:   3'- -CCGCC---GCGGCGGCGCauuuuCAACUU- -5'
7771 5' -55 NC_001973.1 + 111295 0.7 0.787284
Target:  5'- uGGUGGCGCCGC-GCGUGAu------- -3'
miRNA:   3'- -CCGCCGCGGCGgCGCAUUuucaacuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.