miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7771 5' -55 NC_001973.1 + 35049 0.7 0.777962
Target:  5'- aGGCGGCGCaguucgauuucCGCCGCGgcGccGacgUGAAg -3'
miRNA:   3'- -CCGCCGCG-----------GCGGCGCauUuuCa--ACUU- -5'
7771 5' -55 NC_001973.1 + 94411 0.7 0.768507
Target:  5'- cGCGGCGCCGCCcggacCGgcGgcGUUGGc -3'
miRNA:   3'- cCGCCGCGGCGGc----GCauUuuCAACUu -5'
7771 5' -55 NC_001973.1 + 111074 0.7 0.739436
Target:  5'- cGCGGCGCCcgacguggGCCGCGUcGAGGa---- -3'
miRNA:   3'- cCGCCGCGG--------CGGCGCAuUUUCaacuu -5'
7771 5' -55 NC_001973.1 + 71791 0.71 0.729542
Target:  5'- cGGCGGCGCCcccgucGCCgcucgaGCGUAAGAaaUGAAa -3'
miRNA:   3'- -CCGCCGCGG------CGG------CGCAUUUUcaACUU- -5'
7771 5' -55 NC_001973.1 + 37777 0.71 0.699383
Target:  5'- gGGgGGCGCCGCCGCGc---------- -3'
miRNA:   3'- -CCgCCGCGGCGGCGCauuuucaacuu -5'
7771 5' -55 NC_001973.1 + 121550 0.72 0.668705
Target:  5'- aGCGGCGUCGgCGCGUGu-GGUgGAAc -3'
miRNA:   3'- cCGCCGCGGCgGCGCAUuuUCAaCUU- -5'
7771 5' -55 NC_001973.1 + 53864 0.72 0.658406
Target:  5'- cGGCGGCGCCGCCgagcGCGgcGGccgUGGc -3'
miRNA:   3'- -CCGCCGCGGCGG----CGCauUUucaACUu -5'
7771 5' -55 NC_001973.1 + 83730 0.73 0.606759
Target:  5'- aGCGGCGCCGCgucCGCGacuUGGAGGUgGAGc -3'
miRNA:   3'- cCGCCGCGGCG---GCGC---AUUUUCAaCUU- -5'
7771 5' -55 NC_001973.1 + 133304 0.75 0.486327
Target:  5'- cGGCGGCGCCGUCGCGc----GgcGAAa -3'
miRNA:   3'- -CCGCCGCGGCGGCGCauuuuCaaCUU- -5'
7771 5' -55 NC_001973.1 + 104268 0.77 0.386779
Target:  5'- cGGCGGCGCCGCCGCc---GGGcUGGu -3'
miRNA:   3'- -CCGCCGCGGCGGCGcauuUUCaACUu -5'
7771 5' -55 NC_001973.1 + 83092 0.77 0.378413
Target:  5'- cGGCGGCGCCGUCGCGcucaUGcAAGUgGAc -3'
miRNA:   3'- -CCGCCGCGGCGGCGC----AUuUUCAaCUu -5'
7771 5' -55 NC_001973.1 + 50109 1.09 0.003571
Target:  5'- cGGCGGCGCCGCCGCGUAAAAGUUGAAa -3'
miRNA:   3'- -CCGCCGCGGCGGCGCAUUUUCAACUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.