miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7777 3' -52.3 NC_001973.1 + 34311 0.66 0.988636
Target:  5'- uGCGCCG-CGGCGccaACggGUCCUUggUGu -3'
miRNA:   3'- -UGCGGCuGCUGC---UGaaCAGGAAgaAC- -5'
7777 3' -52.3 NC_001973.1 + 109123 0.66 0.985465
Target:  5'- cCGCCG-CGGCGGCgg--CCU-CUUGg -3'
miRNA:   3'- uGCGGCuGCUGCUGaacaGGAaGAAC- -5'
7777 3' -52.3 NC_001973.1 + 74572 0.66 0.983646
Target:  5'- gAUGCgCGGCGGCGGCgucGUCCUcgUCc-- -3'
miRNA:   3'- -UGCG-GCUGCUGCUGaa-CAGGA--AGaac -5'
7777 3' -52.3 NC_001973.1 + 103772 0.66 0.983068
Target:  5'- gACGgCGGCGACGAaaauauacuuugcaCUUGgCCUUCa-- -3'
miRNA:   3'- -UGCgGCUGCUGCU--------------GAACaGGAAGaac -5'
7777 3' -52.3 NC_001973.1 + 8193 0.66 0.98166
Target:  5'- cGCGCCGACGGCaccGCUUGgcgCCg----- -3'
miRNA:   3'- -UGCGGCUGCUGc--UGAACa--GGaagaac -5'
7777 3' -52.3 NC_001973.1 + 127882 0.67 0.979498
Target:  5'- aGCGaCCGGuCGAUGGCguccaccagGUCCUcCUUGg -3'
miRNA:   3'- -UGC-GGCU-GCUGCUGaa-------CAGGAaGAAC- -5'
7777 3' -52.3 NC_001973.1 + 52257 0.67 0.979498
Target:  5'- uCGCCGACGAacucCGccuugcuCUUGUCggUCUUGg -3'
miRNA:   3'- uGCGGCUGCU----GCu------GAACAGgaAGAAC- -5'
7777 3' -52.3 NC_001973.1 + 137336 0.67 0.977152
Target:  5'- cGCGCgCGACGACGAUUgUGUCa-UCg-- -3'
miRNA:   3'- -UGCG-GCUGCUGCUGA-ACAGgaAGaac -5'
7777 3' -52.3 NC_001973.1 + 10805 0.67 0.974615
Target:  5'- gGCGCCGACGGCGGCgagaaucgCCa----- -3'
miRNA:   3'- -UGCGGCUGCUGCUGaaca----GGaagaac -5'
7777 3' -52.3 NC_001973.1 + 28397 0.67 0.974615
Target:  5'- cGCGCCGGCGACGcCgucagUGagCgcgCUUGg -3'
miRNA:   3'- -UGCGGCUGCUGCuGa----ACagGaa-GAAC- -5'
7777 3' -52.3 NC_001973.1 + 85058 0.67 0.973815
Target:  5'- uCGCCGACGACGAagaUgcgcacggugaugaUGUCgUUCUc- -3'
miRNA:   3'- uGCGGCUGCUGCUg--A--------------ACAGgAAGAac -5'
7777 3' -52.3 NC_001973.1 + 127117 0.68 0.962405
Target:  5'- -aGCUGGCGGCGAC--GUCCUUggccacaaaCUUGa -3'
miRNA:   3'- ugCGGCUGCUGCUGaaCAGGAA---------GAAC- -5'
7777 3' -52.3 NC_001973.1 + 124336 0.68 0.958805
Target:  5'- cACGCCGACGugGCGGCc-GUCCUg---- -3'
miRNA:   3'- -UGCGGCUGC--UGCUGaaCAGGAagaac -5'
7777 3' -52.3 NC_001973.1 + 113299 0.68 0.954976
Target:  5'- gACGCCGcCGaACGGCUUGUCgUgcUCg-- -3'
miRNA:   3'- -UGCGGCuGC-UGCUGAACAGgA--AGaac -5'
7777 3' -52.3 NC_001973.1 + 103225 0.7 0.903399
Target:  5'- uCGCCGACGACGGCggacgCCaUCgcgUGg -3'
miRNA:   3'- uGCGGCUGCUGCUGaaca-GGaAGa--AC- -5'
7777 3' -52.3 NC_001973.1 + 95543 0.71 0.883185
Target:  5'- gGCGCCGGCGACGACaaGaucgCCgUCgUGg -3'
miRNA:   3'- -UGCGGCUGCUGCUGaaCa---GGaAGaAC- -5'
7777 3' -52.3 NC_001973.1 + 16903 0.71 0.860906
Target:  5'- cGCGCCGGCGGCGGCgg--CCUcUCg-- -3'
miRNA:   3'- -UGCGGCUGCUGCUGaacaGGA-AGaac -5'
7777 3' -52.3 NC_001973.1 + 42479 1.09 0.006895
Target:  5'- gACGCCGACGACGACUUGUCCUUCUUGg -3'
miRNA:   3'- -UGCGGCUGCUGCUGAACAGGAAGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.