miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7777 5' -59.1 NC_001973.1 + 155396 0.66 0.835366
Target:  5'- cUCGAGCCcGuuGAGCCUgcucucgagCCCGUUGa -3'
miRNA:   3'- cAGCUCGGcCugUUCGGA---------GGGCAGCc -5'
7777 5' -59.1 NC_001973.1 + 154273 0.66 0.827313
Target:  5'- aGUCaAGCUGuGACAAGCCcaCCgGUcCGGg -3'
miRNA:   3'- -CAGcUCGGC-CUGUUCGGa-GGgCA-GCC- -5'
7777 5' -59.1 NC_001973.1 + 119144 0.66 0.819095
Target:  5'- uUCGAcuacauggagaaGCUGGGCAAGUCcaucgacgcgCCCGUCGa -3'
miRNA:   3'- cAGCU------------CGGCCUGUUCGGa---------GGGCAGCc -5'
7777 5' -59.1 NC_001973.1 + 89598 0.66 0.819095
Target:  5'- gGUCGccacguacacguGGCCGGGCAcgugcGGCUUCgCgCGUUGGu -3'
miRNA:   3'- -CAGC------------UCGGCCUGU-----UCGGAG-G-GCAGCC- -5'
7777 5' -59.1 NC_001973.1 + 18625 0.67 0.793522
Target:  5'- -aCGAGCCGccguuCGAGCCguccgacggCCCGaCGGg -3'
miRNA:   3'- caGCUCGGCcu---GUUCGGa--------GGGCaGCC- -5'
7777 5' -59.1 NC_001973.1 + 21543 0.67 0.784717
Target:  5'- cUCGGcGUCGGGCGcGCCguggUCCCGgcgcgCGGg -3'
miRNA:   3'- cAGCU-CGGCCUGUuCGG----AGGGCa----GCC- -5'
7777 5' -59.1 NC_001973.1 + 70533 0.67 0.784717
Target:  5'- aUCGuGCU-GACGaaacGGCCUCCCGUgagcCGGg -3'
miRNA:   3'- cAGCuCGGcCUGU----UCGGAGGGCA----GCC- -5'
7777 5' -59.1 NC_001973.1 + 51576 0.67 0.76582
Target:  5'- aUCGAGCCGGGCGcGCCcgggcauuauugaUCgCGaggagUCGGg -3'
miRNA:   3'- cAGCUCGGCCUGUuCGG-------------AGgGC-----AGCC- -5'
7777 5' -59.1 NC_001973.1 + 37951 0.67 0.746437
Target:  5'- uUCGAGCCGGuCAugaguuuGGCCUUCgugcgcaCGUCGa -3'
miRNA:   3'- cAGCUCGGCCuGU-------UCGGAGG-------GCAGCc -5'
7777 5' -59.1 NC_001973.1 + 94669 0.68 0.729492
Target:  5'- -gCGAGCCGGGCGacacGGCCUacgugCUCuUCGGc -3'
miRNA:   3'- caGCUCGGCCUGU----UCGGA-----GGGcAGCC- -5'
7777 5' -59.1 NC_001973.1 + 146060 0.68 0.729492
Target:  5'- gGUUGGGCCGcGGCGccgAGCCggCUCGggCGGg -3'
miRNA:   3'- -CAGCUCGGC-CUGU---UCGGa-GGGCa-GCC- -5'
7777 5' -59.1 NC_001973.1 + 23666 0.68 0.719965
Target:  5'- cUCGAGaUCGGugcucGCGGGCCUCCgcgCGUCGa -3'
miRNA:   3'- cAGCUC-GGCC-----UGUUCGGAGG---GCAGCc -5'
7777 5' -59.1 NC_001973.1 + 24122 0.68 0.719009
Target:  5'- -cUGAGCCGGGCGAGCucgcgggugcgcgCgccgCCCGccUCGGc -3'
miRNA:   3'- caGCUCGGCCUGUUCG-------------Ga---GGGC--AGCC- -5'
7777 5' -59.1 NC_001973.1 + 157508 0.68 0.700711
Target:  5'- aUCaGGUCGaACAGGUC-CCCGUCGGg -3'
miRNA:   3'- cAGcUCGGCcUGUUCGGaGGGCAGCC- -5'
7777 5' -59.1 NC_001973.1 + 63077 0.68 0.700711
Target:  5'- cUCGAGCaCGGugAGGCUguUCaCGUUGGu -3'
miRNA:   3'- cAGCUCG-GCCugUUCGG--AGgGCAGCC- -5'
7777 5' -59.1 NC_001973.1 + 154204 0.68 0.690999
Target:  5'- aGUCGGGCUGcGACAGGCCcaaguccucUUCCGcCGu -3'
miRNA:   3'- -CAGCUCGGC-CUGUUCGG---------AGGGCaGCc -5'
7777 5' -59.1 NC_001973.1 + 55938 0.68 0.690999
Target:  5'- cUCGAGUaguaCGGACucgGGCCcgUUCUGUCGGg -3'
miRNA:   3'- cAGCUCG----GCCUGu--UCGG--AGGGCAGCC- -5'
7777 5' -59.1 NC_001973.1 + 16901 0.69 0.681241
Target:  5'- uUCGcGCCGGcgGCGgcGGCCUCUCGgCGGc -3'
miRNA:   3'- cAGCuCGGCC--UGU--UCGGAGGGCaGCC- -5'
7777 5' -59.1 NC_001973.1 + 21270 0.69 0.671447
Target:  5'- aUCGAGCCGcGGCGuccGCCgggCCGUCGc -3'
miRNA:   3'- cAGCUCGGC-CUGUu--CGGag-GGCAGCc -5'
7777 5' -59.1 NC_001973.1 + 35557 0.69 0.671447
Target:  5'- cGUgGAGCCGGcgaaGCGAGCCgcgUUCGcCGGc -3'
miRNA:   3'- -CAgCUCGGCC----UGUUCGGa--GGGCaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.