miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7778 5' -57.7 NC_001973.1 + 91707 0.67 0.819555
Target:  5'- uGCGA--GGGUGCUCGGuCaUGGGCg- -3'
miRNA:   3'- gCGCUcaCCCACGAGCU-GcACCUGaa -5'
7778 5' -57.7 NC_001973.1 + 7446 0.68 0.765931
Target:  5'- aCGUGAGcucgGcGGUGCggcgCGACGaGGACUUu -3'
miRNA:   3'- -GCGCUCa---C-CCACGa---GCUGCaCCUGAA- -5'
7778 5' -57.7 NC_001973.1 + 74978 0.69 0.668238
Target:  5'- aCGgGGGgcagcGGGUGCUCGGCGuUGGugcGCUUc -3'
miRNA:   3'- -GCgCUCa----CCCACGAGCUGC-ACC---UGAA- -5'
7778 5' -57.7 NC_001973.1 + 6843 0.73 0.461894
Target:  5'- uCGCGAGUGc--GCUCGACGgagGGGCUg -3'
miRNA:   3'- -GCGCUCACccaCGAGCUGCa--CCUGAa -5'
7778 5' -57.7 NC_001973.1 + 41799 1.05 0.004056
Target:  5'- gCGCGAGUGGGUGCUCGACGUGGACUUc -3'
miRNA:   3'- -GCGCUCACCCACGAGCUGCACCUGAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.