Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7781 | 3' | -56.9 | NC_001973.1 | + | 40870 | 0.82 | 0.140642 |
Target: 5'- cGUCCGCCGAGCUCgAGUUUa-GGCAUGa -3' miRNA: 3'- -CAGGCGGCUCGAG-UCAAAccCCGUAC- -5' |
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7781 | 3' | -56.9 | NC_001973.1 | + | 40948 | 0.82 | 0.140642 |
Target: 5'- cGUCCGCCGAGCUCgAGUUUa-GGCAUGa -3' miRNA: 3'- -CAGGCGGCUCGAG-UCAAAccCCGUAC- -5' |
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7781 | 3' | -56.9 | NC_001973.1 | + | 114688 | 0.83 | 0.133563 |
Target: 5'- -cCCGCCGAGCUCgAGUUU-GGGCGUGa -3' miRNA: 3'- caGGCGGCUCGAG-UCAAAcCCCGUAC- -5' |
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7781 | 3' | -56.9 | NC_001973.1 | + | 114996 | 0.89 | 0.047287 |
Target: 5'- cGUCCGCCGAGCUCgAGUUU-GGGCAUGa -3' miRNA: 3'- -CAGGCGGCUCGAG-UCAAAcCCCGUAC- -5' |
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7781 | 3' | -56.9 | NC_001973.1 | + | 114840 | 0.89 | 0.047287 |
Target: 5'- cGUCCGCCGAGCUCgAGUUU-GGGCAUGa -3' miRNA: 3'- -CAGGCGGCUCGAG-UCAAAcCCCGUAC- -5' |
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7781 | 3' | -56.9 | NC_001973.1 | + | 41027 | 1.09 | 0.002332 |
Target: 5'- cGUCCGCCGAGCUCAGUUUGGGGCAUGa -3' miRNA: 3'- -CAGGCGGCUCGAGUCAAACCCCGUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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