miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7781 5' -58.5 NC_001973.1 + 115063 0.68 0.735523
Target:  5'- aGCUcGAgcaaACCCGAUucCGGCCUCGGCg- -3'
miRNA:   3'- cCGAaCU----UGGGCUA--GCUGGGGCCGgc -5'
7781 5' -58.5 NC_001973.1 + 83043 0.68 0.726033
Target:  5'- aGGCggcGcGCCCG-UCGAgCCCgCGGCCu -3'
miRNA:   3'- -CCGaa-CuUGGGCuAGCU-GGG-GCCGGc -5'
7781 5' -58.5 NC_001973.1 + 71739 0.69 0.716467
Target:  5'- cGGC----GCCCGcggCcGCCCCGGCCGc -3'
miRNA:   3'- -CCGaacuUGGGCua-GcUGGGGCCGGC- -5'
7781 5' -58.5 NC_001973.1 + 40890 0.69 0.710694
Target:  5'- aGGCaugaucucaucugauUUGAACUCGAU-GACCCUaGCCGg -3'
miRNA:   3'- -CCG---------------AACUUGGGCUAgCUGGGGcCGGC- -5'
7781 5' -58.5 NC_001973.1 + 2520 0.69 0.667793
Target:  5'- cGGCguucaUGuccuGCgCGAacUCGACCUCGGCCa -3'
miRNA:   3'- -CCGa----ACu---UGgGCU--AGCUGGGGCCGGc -5'
7781 5' -58.5 NC_001973.1 + 151786 0.7 0.6382
Target:  5'- aGCUUGGACauGGUCGugCCCGaCCa -3'
miRNA:   3'- cCGAACUUGggCUAGCugGGGCcGGc -5'
7781 5' -58.5 NC_001973.1 + 51452 0.7 0.628317
Target:  5'- aGGCcgcGAGCCCGggCGAgCUcgagCGGCCGg -3'
miRNA:   3'- -CCGaa-CUUGGGCuaGCUgGG----GCCGGC- -5'
7781 5' -58.5 NC_001973.1 + 132982 0.71 0.588881
Target:  5'- cGGcCUUGAugCCGAUCuuggucaucGCCuuGGCCa -3'
miRNA:   3'- -CC-GAACUugGGCUAGc--------UGGggCCGGc -5'
7781 5' -58.5 NC_001973.1 + 133261 0.71 0.57908
Target:  5'- uGGCguccAGCUCGGccUCGGCCgCGGCCGa -3'
miRNA:   3'- -CCGaac-UUGGGCU--AGCUGGgGCCGGC- -5'
7781 5' -58.5 NC_001973.1 + 2653 0.71 0.550875
Target:  5'- uGCUUGuaccgaugacaucacGCCCGAgcUCGAgCUCGGCCGa -3'
miRNA:   3'- cCGAACu--------------UGGGCU--AGCUgGGGCCGGC- -5'
7781 5' -58.5 NC_001973.1 + 62917 0.71 0.54991
Target:  5'- aGCacGAGCgCCGAuUCGACUCgGGCCGg -3'
miRNA:   3'- cCGaaCUUG-GGCU-AGCUGGGgCCGGC- -5'
7781 5' -58.5 NC_001973.1 + 23726 0.73 0.483898
Target:  5'- gGGCUcgcUGAcggGCCCGAcggCGACcgcgCCCGGCCu -3'
miRNA:   3'- -CCGA---ACU---UGGGCUa--GCUG----GGGCCGGc -5'
7781 5' -58.5 NC_001973.1 + 126089 0.73 0.448798
Target:  5'- --gUUGAGCCCGAgagcgugccgacgcgUGAgCCCGGCCGg -3'
miRNA:   3'- ccgAACUUGGGCUa--------------GCUgGGGCCGGC- -5'
7781 5' -58.5 NC_001973.1 + 114952 0.74 0.43049
Target:  5'- cGGCUUGAACUCuGUUaACCCCuGCCGa -3'
miRNA:   3'- -CCGAACUUGGGcUAGcUGGGGcCGGC- -5'
7781 5' -58.5 NC_001973.1 + 114642 0.74 0.421927
Target:  5'- cGGCUUGAcCUCcAUCGACCCUuGCCGc -3'
miRNA:   3'- -CCGAACUuGGGcUAGCUGGGGcCGGC- -5'
7781 5' -58.5 NC_001973.1 + 114874 0.74 0.413468
Target:  5'- cGGCUUGAACUCuGUUaACCCCuGCCGg -3'
miRNA:   3'- -CCGAACUUGGGcUAGcUGGGGcCGGC- -5'
7781 5' -58.5 NC_001973.1 + 40982 0.76 0.342255
Target:  5'- cGGaUUUGAACUCGAUUGACCCUuGCCa -3'
miRNA:   3'- -CC-GAACUUGGGCUAGCUGGGGcCGGc -5'
7781 5' -58.5 NC_001973.1 + 114564 0.79 0.217134
Target:  5'- gGGCUUGAACUCuGUUGACCCUuGCCGg -3'
miRNA:   3'- -CCGAACUUGGGcUAGCUGGGGcCGGC- -5'
7781 5' -58.5 NC_001973.1 + 114721 0.84 0.098431
Target:  5'- gGGUUUGAACUCGAUUGACCCUuGCCGg -3'
miRNA:   3'- -CCGAACUUGGGCUAGCUGGGGcCGGC- -5'
7781 5' -58.5 NC_001973.1 + 115030 0.98 0.01169
Target:  5'- cGGUUUGAACCCGAUCGACCCCGGCg- -3'
miRNA:   3'- -CCGAACUUGGGCUAGCUGGGGCCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.