miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7782 3' -53.2 NC_001973.1 + 135856 0.66 0.98001
Target:  5'- uGGAGCGaGGUgUgCGUCGGguGCGUGugCc -3'
miRNA:   3'- -CUUCGCaCUAgA-GUAGCC--CGCACugG- -5'
7782 3' -53.2 NC_001973.1 + 76993 0.66 0.98001
Target:  5'- -cGGCGccacgcUGAUCaccUCGUCGGGCGgcGGCg -3'
miRNA:   3'- cuUCGC------ACUAG---AGUAGCCCGCa-CUGg -5'
7782 3' -53.2 NC_001973.1 + 135108 0.66 0.98001
Target:  5'- ----gGUGGUCcgacaGUCGGGgGUGACUg -3'
miRNA:   3'- cuucgCACUAGag---UAGCCCgCACUGG- -5'
7782 3' -53.2 NC_001973.1 + 99909 0.66 0.972573
Target:  5'- -cGGCGUGuugCUCAcgaauugaaaaUCGuacGCGUGGCCg -3'
miRNA:   3'- cuUCGCACua-GAGU-----------AGCc--CGCACUGG- -5'
7782 3' -53.2 NC_001973.1 + 111801 0.67 0.966616
Target:  5'- aGGGCGUG--CUCAaCGGGUGcgacgaccUGACCg -3'
miRNA:   3'- cUUCGCACuaGAGUaGCCCGC--------ACUGG- -5'
7782 3' -53.2 NC_001973.1 + 21535 0.67 0.959799
Target:  5'- --uGCcUGAUCUCggcGUCGGGCGc-GCCg -3'
miRNA:   3'- cuuCGcACUAGAG---UAGCCCGCacUGG- -5'
7782 3' -53.2 NC_001973.1 + 14362 0.67 0.95208
Target:  5'- -cGGCGUGGUCgaCGgggCGcGGCGaGGCCg -3'
miRNA:   3'- cuUCGCACUAGa-GUa--GC-CCGCaCUGG- -5'
7782 3' -53.2 NC_001973.1 + 70065 0.68 0.943424
Target:  5'- uGAAGCGUGGUgUaCGgcaGGGCG-GGCUc -3'
miRNA:   3'- -CUUCGCACUAgA-GUag-CCCGCaCUGG- -5'
7782 3' -53.2 NC_001973.1 + 76568 0.69 0.905512
Target:  5'- -cGGCGUGAacgaAUCGaGCGUGGCCg -3'
miRNA:   3'- cuUCGCACUagagUAGCcCGCACUGG- -5'
7782 3' -53.2 NC_001973.1 + 132458 0.7 0.878573
Target:  5'- cGggGCGcGGcCUCGUCGGGCuc-GCCg -3'
miRNA:   3'- -CuuCGCaCUaGAGUAGCCCGcacUGG- -5'
7782 3' -53.2 NC_001973.1 + 44790 0.7 0.863743
Target:  5'- -uGGCGUcGAaCUCGUCGaucGGCGUGuCCa -3'
miRNA:   3'- cuUCGCA-CUaGAGUAGC---CCGCACuGG- -5'
7782 3' -53.2 NC_001973.1 + 114546 0.75 0.637752
Target:  5'- -cGGCGgcaUGAUCUCAUCGGGCuUGAa- -3'
miRNA:   3'- cuUCGC---ACUAGAGUAGCCCGcACUgg -5'
7782 3' -53.2 NC_001973.1 + 114705 0.75 0.617081
Target:  5'- uGGGCGUGAUgUCAUCGGGUuUGAa- -3'
miRNA:   3'- cUUCGCACUAgAGUAGCCCGcACUgg -5'
7782 3' -53.2 NC_001973.1 + 114781 0.75 0.596456
Target:  5'- uAGGCGUGAUgUCAUCG-GCuUGACCu -3'
miRNA:   3'- cUUCGCACUAgAGUAGCcCGcACUGG- -5'
7782 3' -53.2 NC_001973.1 + 41045 0.81 0.338438
Target:  5'- uGggGCaUGAUCUCAUCGGGCuUGAaCCc -3'
miRNA:   3'- -CuuCGcACUAGAGUAGCCCGcACU-GG- -5'
7782 3' -53.2 NC_001973.1 + 40809 1.12 0.003673
Target:  5'- cGAAGCGUGAUCUCAUCGGGCGUGACCu -3'
miRNA:   3'- -CUUCGCACUAGAGUAGCCCGCACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.