miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7782 5' -50 NC_001973.1 + 144530 0.66 0.998415
Target:  5'- -gAGCgaaGACGCGgaGAcgCcCGCGCGg -3'
miRNA:   3'- gaUCGg--CUGCGCauUUuaGaGUGCGC- -5'
7782 5' -50 NC_001973.1 + 124283 0.66 0.998415
Target:  5'- -cGGCCGACGCucugaugcaaugGUAc-GUCggcggCACGCGc -3'
miRNA:   3'- gaUCGGCUGCG------------CAUuuUAGa----GUGCGC- -5'
7782 5' -50 NC_001973.1 + 111471 0.66 0.998415
Target:  5'- -aGGCCG-CGCGUcAAGUUcgUCGcCGCGc -3'
miRNA:   3'- gaUCGGCuGCGCAuUUUAG--AGU-GCGC- -5'
7782 5' -50 NC_001973.1 + 45662 0.66 0.998097
Target:  5'- -cGGCCuGCGCGUcucGGA--UUCGCGCGu -3'
miRNA:   3'- gaUCGGcUGCGCA---UUUuaGAGUGCGC- -5'
7782 5' -50 NC_001973.1 + 27872 0.66 0.998097
Target:  5'- -cGGCCGcggGCGCGggcgcgcUCUCGcCGCGa -3'
miRNA:   3'- gaUCGGC---UGCGCauuuu--AGAGU-GCGC- -5'
7782 5' -50 NC_001973.1 + 774 0.66 0.998097
Target:  5'- -cGGCCGuaguugccuCGCGUGAAAUC-CGC-CGa -3'
miRNA:   3'- gaUCGGCu--------GCGCAUUUUAGaGUGcGC- -5'
7782 5' -50 NC_001973.1 + 5899 0.66 0.997728
Target:  5'- --cGCgCGACGCGaacGAGAUCcUCGCGUc -3'
miRNA:   3'- gauCG-GCUGCGCa--UUUUAG-AGUGCGc -5'
7782 5' -50 NC_001973.1 + 147068 0.66 0.997728
Target:  5'- --uGCCGaucugGCGCGUGGAGgg-CGCGCu -3'
miRNA:   3'- gauCGGC-----UGCGCAUUUUagaGUGCGc -5'
7782 5' -50 NC_001973.1 + 152405 0.66 0.997728
Target:  5'- -gGGgCGGCGCGcAAAcuuaUCGCGCGg -3'
miRNA:   3'- gaUCgGCUGCGCaUUUuag-AGUGCGC- -5'
7782 5' -50 NC_001973.1 + 155053 0.66 0.997728
Target:  5'- cCUAGCCGcCGCGcucg--CUCGCGa- -3'
miRNA:   3'- -GAUCGGCuGCGCauuuuaGAGUGCgc -5'
7782 5' -50 NC_001973.1 + 2885 0.66 0.997301
Target:  5'- -cGGCgGACGCGc---GUCgUCGCGCu -3'
miRNA:   3'- gaUCGgCUGCGCauuuUAG-AGUGCGc -5'
7782 5' -50 NC_001973.1 + 51159 0.66 0.997301
Target:  5'- -cGGCCauccGCGCGUu-GAUCacgUCGCGCGu -3'
miRNA:   3'- gaUCGGc---UGCGCAuuUUAG---AGUGCGC- -5'
7782 5' -50 NC_001973.1 + 112678 0.66 0.997301
Target:  5'- gCUGGCCGuugGCGcCGUcguaAAAGUCUaGCGUGa -3'
miRNA:   3'- -GAUCGGC---UGC-GCA----UUUUAGAgUGCGC- -5'
7782 5' -50 NC_001973.1 + 141129 0.66 0.997301
Target:  5'- -cGGCuCGACGCacGUGAAAUUcaUCcaGCGCGa -3'
miRNA:   3'- gaUCG-GCUGCG--CAUUUUAG--AG--UGCGC- -5'
7782 5' -50 NC_001973.1 + 105040 0.66 0.996809
Target:  5'- --cGuuGACGCGg---GUCUCGgGCGc -3'
miRNA:   3'- gauCggCUGCGCauuuUAGAGUgCGC- -5'
7782 5' -50 NC_001973.1 + 42876 0.66 0.996809
Target:  5'- -gAGCggCGGCGCGU--GAUCUgcaGCGCGu -3'
miRNA:   3'- gaUCG--GCUGCGCAuuUUAGAg--UGCGC- -5'
7782 5' -50 NC_001973.1 + 36332 0.66 0.996809
Target:  5'- -cGGCCGACGCGggc---CUCG-GCGu -3'
miRNA:   3'- gaUCGGCUGCGCauuuuaGAGUgCGC- -5'
7782 5' -50 NC_001973.1 + 29782 0.66 0.996592
Target:  5'- gCUGGCCgucGACGCGacuacuguuUCUUGCGCa -3'
miRNA:   3'- -GAUCGG---CUGCGCauuuu----AGAGUGCGc -5'
7782 5' -50 NC_001973.1 + 52783 0.67 0.996245
Target:  5'- -cAGCCGGC-CGUcGAGaCUCuGCGCGg -3'
miRNA:   3'- gaUCGGCUGcGCAuUUUaGAG-UGCGC- -5'
7782 5' -50 NC_001973.1 + 7941 0.67 0.996245
Target:  5'- -cGGCCGGCGUGgug-----CACGCGc -3'
miRNA:   3'- gaUCGGCUGCGCauuuuagaGUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.