miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7789 3' -57.5 NC_001973.1 + 118428 0.66 0.87449
Target:  5'- -gCCGCCggGcUCGACGaGCGCaaGCGCGa -3'
miRNA:   3'- aaGGCGGagC-AGCUGCaUGUG--CGCGU- -5'
7789 3' -57.5 NC_001973.1 + 29250 0.66 0.870159
Target:  5'- -aCCaCCUCGUCGAuggacacccacagcaCGUACGCG-GCGu -3'
miRNA:   3'- aaGGcGGAGCAGCU---------------GCAUGUGCgCGU- -5'
7789 3' -57.5 NC_001973.1 + 72652 0.66 0.86723
Target:  5'- -aCCGCCgCG-CG-CGUGCACGUGaCGg -3'
miRNA:   3'- aaGGCGGaGCaGCuGCAUGUGCGC-GU- -5'
7789 3' -57.5 NC_001973.1 + 31575 0.66 0.86723
Target:  5'- gUCCGCCUCGUaguaGgccACGUugG-GCGCc -3'
miRNA:   3'- aAGGCGGAGCAg---C---UGCAugUgCGCGu -5'
7789 3' -57.5 NC_001973.1 + 38158 0.66 0.859764
Target:  5'- -cCCGCCgaGagGACGggcaagacuUGCACGCGCAc -3'
miRNA:   3'- aaGGCGGagCagCUGC---------AUGUGCGCGU- -5'
7789 3' -57.5 NC_001973.1 + 8064 0.66 0.852097
Target:  5'- gUCgCGCUggCGcUCGGCGcGCACGCGUu -3'
miRNA:   3'- aAG-GCGGa-GC-AGCUGCaUGUGCGCGu -5'
7789 3' -57.5 NC_001973.1 + 51700 0.66 0.847404
Target:  5'- -aCCGCCaccugugcgcgcuguUCGUC-AUGcACACGCGCGa -3'
miRNA:   3'- aaGGCGG---------------AGCAGcUGCaUGUGCGCGU- -5'
7789 3' -57.5 NC_001973.1 + 32562 0.66 0.844236
Target:  5'- -gCCGCCgacgccgcCGUCGGCucgGCGCGCuGCGa -3'
miRNA:   3'- aaGGCGGa-------GCAGCUGca-UGUGCG-CGU- -5'
7789 3' -57.5 NC_001973.1 + 70010 0.66 0.844236
Target:  5'- -gCCGCC-C-UCGACcaGCGCGCGCu -3'
miRNA:   3'- aaGGCGGaGcAGCUGcaUGUGCGCGu -5'
7789 3' -57.5 NC_001973.1 + 83520 0.66 0.844236
Target:  5'- -gCCGgCUCGcCGACGaGCuggaaacgGCGCGCGa -3'
miRNA:   3'- aaGGCgGAGCaGCUGCaUG--------UGCGCGU- -5'
7789 3' -57.5 NC_001973.1 + 6022 0.66 0.844236
Target:  5'- cUUCGCgCUCGaCGAgcgcgcucCGUugACGCGCGc -3'
miRNA:   3'- aAGGCG-GAGCaGCU--------GCAugUGCGCGU- -5'
7789 3' -57.5 NC_001973.1 + 105911 0.66 0.839429
Target:  5'- -cCCGCCUCGUCGAugccgaaaaacucuuCGU-C-CGCGUc -3'
miRNA:   3'- aaGGCGGAGCAGCU---------------GCAuGuGCGCGu -5'
7789 3' -57.5 NC_001973.1 + 11522 0.66 0.836188
Target:  5'- cUCgGcCCUCGUUGGUGgcCACGUGCAc -3'
miRNA:   3'- aAGgC-GGAGCAGCUGCauGUGCGCGU- -5'
7789 3' -57.5 NC_001973.1 + 131532 0.66 0.836188
Target:  5'- -aCCGCCUCGccuaCGAUGaACGCGUcgGCGa -3'
miRNA:   3'- aaGGCGGAGCa---GCUGCaUGUGCG--CGU- -5'
7789 3' -57.5 NC_001973.1 + 4844 0.66 0.836188
Target:  5'- -aCCGCUUaaaGUCGGCGgGCGCGaCGUu -3'
miRNA:   3'- aaGGCGGAg--CAGCUGCaUGUGC-GCGu -5'
7789 3' -57.5 NC_001973.1 + 17584 0.66 0.836188
Target:  5'- --gCGCCcgaGUCGGCGUGCugGCa-- -3'
miRNA:   3'- aagGCGGag-CAGCUGCAUGugCGcgu -5'
7789 3' -57.5 NC_001973.1 + 88139 0.66 0.836188
Target:  5'- -gCCGCgccCUCGUCGGCGgccgACGC-CGCc -3'
miRNA:   3'- aaGGCG---GAGCAGCUGCa---UGUGcGCGu -5'
7789 3' -57.5 NC_001973.1 + 10542 0.67 0.827958
Target:  5'- -cCCGgCUCGaCGACGUGCuCGuCGCc -3'
miRNA:   3'- aaGGCgGAGCaGCUGCAUGuGC-GCGu -5'
7789 3' -57.5 NC_001973.1 + 3595 0.67 0.827958
Target:  5'- cUUCGgCUCGUacaGcACGUccACGCGCGCGg -3'
miRNA:   3'- aAGGCgGAGCAg--C-UGCA--UGUGCGCGU- -5'
7789 3' -57.5 NC_001973.1 + 72865 0.67 0.827958
Target:  5'- -gCCGCCUCGcgCGccucGCGc-CACGCGCu -3'
miRNA:   3'- aaGGCGGAGCa-GC----UGCauGUGCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.