miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7789 3' -57.5 NC_001973.1 + 3595 0.67 0.827958
Target:  5'- cUUCGgCUCGUacaGcACGUccACGCGCGCGg -3'
miRNA:   3'- aAGGCgGAGCAg--C-UGCA--UGUGCGCGU- -5'
7789 3' -57.5 NC_001973.1 + 3854 0.72 0.528147
Target:  5'- -gCCGgCUCGUCGAUGUGCAUGaCGa- -3'
miRNA:   3'- aaGGCgGAGCAGCUGCAUGUGC-GCgu -5'
7789 3' -57.5 NC_001973.1 + 4611 0.67 0.825455
Target:  5'- gUCCGCCUugcaaaaaaauUGUCuGGCGUACACccugucggcggcggGCGCc -3'
miRNA:   3'- aAGGCGGA-----------GCAG-CUGCAUGUG--------------CGCGu -5'
7789 3' -57.5 NC_001973.1 + 4844 0.66 0.836188
Target:  5'- -aCCGCUUaaaGUCGGCGgGCGCGaCGUu -3'
miRNA:   3'- aaGGCGGAg--CAGCUGCaUGUGC-GCGu -5'
7789 3' -57.5 NC_001973.1 + 5751 0.68 0.784361
Target:  5'- -gCCGCCgaagCGgcccaCGGCGcUACGCGCGUc -3'
miRNA:   3'- aaGGCGGa---GCa----GCUGC-AUGUGCGCGu -5'
7789 3' -57.5 NC_001973.1 + 5842 0.67 0.802258
Target:  5'- --gCGCgUCGuUCGGCGagcGCACGCGCc -3'
miRNA:   3'- aagGCGgAGC-AGCUGCa--UGUGCGCGu -5'
7789 3' -57.5 NC_001973.1 + 6022 0.66 0.844236
Target:  5'- cUUCGCgCUCGaCGAgcgcgcucCGUugACGCGCGc -3'
miRNA:   3'- aAGGCG-GAGCaGCU--------GCAugUGCGCGU- -5'
7789 3' -57.5 NC_001973.1 + 7574 0.77 0.307687
Target:  5'- -cUCGCCUCGcUGACGaccgGCGCGCGCAa -3'
miRNA:   3'- aaGGCGGAGCaGCUGCa---UGUGCGCGU- -5'
7789 3' -57.5 NC_001973.1 + 7940 0.67 0.79338
Target:  5'- -gCgGCCgg--CGugGUGCACGCGCc -3'
miRNA:   3'- aaGgCGGagcaGCugCAUGUGCGCGu -5'
7789 3' -57.5 NC_001973.1 + 8064 0.66 0.852097
Target:  5'- gUCgCGCUggCGcUCGGCGcGCACGCGUu -3'
miRNA:   3'- aAG-GCGGa-GC-AGCUGCaUGUGCGCGu -5'
7789 3' -57.5 NC_001973.1 + 10223 0.7 0.648082
Target:  5'- gUCCGUgUCGUagaucACGUcgcGCACGCGCAg -3'
miRNA:   3'- aAGGCGgAGCAgc---UGCA---UGUGCGCGU- -5'
7789 3' -57.5 NC_001973.1 + 10542 0.67 0.827958
Target:  5'- -cCCGgCUCGaCGACGUGCuCGuCGCc -3'
miRNA:   3'- aaGGCgGAGCaGCUGCAUGuGC-GCGu -5'
7789 3' -57.5 NC_001973.1 + 11522 0.66 0.836188
Target:  5'- cUCgGcCCUCGUUGGUGgcCACGUGCAc -3'
miRNA:   3'- aAGgC-GGAGCAGCUGCauGUGCGCGU- -5'
7789 3' -57.5 NC_001973.1 + 14250 0.73 0.489789
Target:  5'- --aCGCCgcgCGUCGACaccaGCACGCGCGa -3'
miRNA:   3'- aagGCGGa--GCAGCUGca--UGUGCGCGU- -5'
7789 3' -57.5 NC_001973.1 + 17584 0.66 0.836188
Target:  5'- --gCGCCcgaGUCGGCGUGCugGCa-- -3'
miRNA:   3'- aagGCGGag-CAGCUGCAUGugCGcgu -5'
7789 3' -57.5 NC_001973.1 + 18053 0.67 0.827958
Target:  5'- -gCCGCC--GUCGAUGUACugGCa-- -3'
miRNA:   3'- aaGGCGGagCAGCUGCAUGugCGcgu -5'
7789 3' -57.5 NC_001973.1 + 23688 0.7 0.668238
Target:  5'- cUCCGCg-CGUCGACGcGCcagcuGCGCGCc -3'
miRNA:   3'- aAGGCGgaGCAGCUGCaUG-----UGCGCGu -5'
7789 3' -57.5 NC_001973.1 + 25831 0.67 0.79338
Target:  5'- gUCCaCCaUGUCGGCGcACGgCGCGCAg -3'
miRNA:   3'- aAGGcGGaGCAGCUGCaUGU-GCGCGU- -5'
7789 3' -57.5 NC_001973.1 + 29035 0.7 0.627876
Target:  5'- --aCGCCUCGgCGACGaACAgCGUGCAc -3'
miRNA:   3'- aagGCGGAGCaGCUGCaUGU-GCGCGU- -5'
7789 3' -57.5 NC_001973.1 + 29108 0.7 0.617774
Target:  5'- -aCCGUaCagGUCGACGaACGCGCGCGu -3'
miRNA:   3'- aaGGCG-GagCAGCUGCaUGUGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.