miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7789 5' -58.2 NC_001973.1 + 73755 0.66 0.84039
Target:  5'- gUCGCGCGCguacaccaCCGACGcGGCGGg -3'
miRNA:   3'- gAGCGCGUGacgc----GGUUGUaCCGCCg -5'
7789 5' -58.2 NC_001973.1 + 28395 0.66 0.84039
Target:  5'- uUCGCGC-CggcGaCGCCGucagugagcgcGCuUGGCGGCc -3'
miRNA:   3'- gAGCGCGuGa--C-GCGGU-----------UGuACCGCCG- -5'
7789 5' -58.2 NC_001973.1 + 17468 0.66 0.84039
Target:  5'- aCUCGaGCAUgccgUGCGCCG-CGaGGuCGGCu -3'
miRNA:   3'- -GAGCgCGUG----ACGCGGUuGUaCC-GCCG- -5'
7789 5' -58.2 NC_001973.1 + 81286 0.66 0.84039
Target:  5'- --aGCauGCACUGCGUguACAUGuaauCGGCg -3'
miRNA:   3'- gagCG--CGUGACGCGguUGUACc---GCCG- -5'
7789 5' -58.2 NC_001973.1 + 27839 0.66 0.84039
Target:  5'- uCUUGCgGCcCgGUugGCCGGCGcUGGCGGCc -3'
miRNA:   3'- -GAGCG-CGuGaCG--CGGUUGU-ACCGCCG- -5'
7789 5' -58.2 NC_001973.1 + 23006 0.66 0.839586
Target:  5'- -aCGUGCAaaagaucUUG-GCCGACGUGGUgugGGCg -3'
miRNA:   3'- gaGCGCGU-------GACgCGGUUGUACCG---CCG- -5'
7789 5' -58.2 NC_001973.1 + 91510 0.66 0.834725
Target:  5'- gUCGCGCAgccacgcguagcguuUUGacuuggaCGCCGGCGguucgucGGCGGCg -3'
miRNA:   3'- gAGCGCGU---------------GAC-------GCGGUUGUa------CCGCCG- -5'
7789 5' -58.2 NC_001973.1 + 8271 0.66 0.832271
Target:  5'- uUCGUGUgccuggacgACUGCGgCuuccuguACAcGGCGGCg -3'
miRNA:   3'- gAGCGCG---------UGACGCgGu------UGUaCCGCCG- -5'
7789 5' -58.2 NC_001973.1 + 8060 0.66 0.827314
Target:  5'- cCUCGuCGCGCUgGCGCuCGGCGcgcacgcguucccgcUGaCGGCg -3'
miRNA:   3'- -GAGC-GCGUGA-CGCG-GUUGU---------------ACcGCCG- -5'
7789 5' -58.2 NC_001973.1 + 37706 0.66 0.826482
Target:  5'- gUUGCGCACUcgacggGCGCCcaccgaguggaguuGACcacgcugcucgccUGGCGGCg -3'
miRNA:   3'- gAGCGCGUGA------CGCGG--------------UUGu------------ACCGCCG- -5'
7789 5' -58.2 NC_001973.1 + 46093 0.66 0.823975
Target:  5'- gCUCGUGCGCUacggccgcGUGCCcGCGcUGGaCGcGCg -3'
miRNA:   3'- -GAGCGCGUGA--------CGCGGuUGU-ACC-GC-CG- -5'
7789 5' -58.2 NC_001973.1 + 91605 0.66 0.823975
Target:  5'- cCUUGuCGCACUGCuCCAccucguGCAgcUGGCuGCg -3'
miRNA:   3'- -GAGC-GCGUGACGcGGU------UGU--ACCGcCG- -5'
7789 5' -58.2 NC_001973.1 + 113237 0.66 0.823975
Target:  5'- uUCGCGuCGCU-CGUCuuguuCAcgGGCGGCa -3'
miRNA:   3'- gAGCGC-GUGAcGCGGuu---GUa-CCGCCG- -5'
7789 5' -58.2 NC_001973.1 + 115404 0.66 0.823975
Target:  5'- -gCGCGCACgauucgcgGCuGCUcaAGC-UGGUGGCg -3'
miRNA:   3'- gaGCGCGUGa-------CG-CGG--UUGuACCGCCG- -5'
7789 5' -58.2 NC_001973.1 + 64378 0.66 0.823975
Target:  5'- aUCGUGC-CUcGCgGCCAucgagaauuGCAUGGUGaGCg -3'
miRNA:   3'- gAGCGCGuGA-CG-CGGU---------UGUACCGC-CG- -5'
7789 5' -58.2 NC_001973.1 + 137198 0.66 0.823975
Target:  5'- aCUCGCgGCGCga-GUC-GCGcGGCGGCg -3'
miRNA:   3'- -GAGCG-CGUGacgCGGuUGUaCCGCCG- -5'
7789 5' -58.2 NC_001973.1 + 143146 0.66 0.823136
Target:  5'- aUCGUGCG-UGC-CCGcaucgacGCcgGGCGGCu -3'
miRNA:   3'- gAGCGCGUgACGcGGU-------UGuaCCGCCG- -5'
7789 5' -58.2 NC_001973.1 + 28635 0.66 0.823136
Target:  5'- gUUGCGCagcgaguccugcaGCUGCGCgAGC---GCGGCg -3'
miRNA:   3'- gAGCGCG-------------UGACGCGgUUGuacCGCCG- -5'
7789 5' -58.2 NC_001973.1 + 72869 0.66 0.821453
Target:  5'- cCUCGCGCGCcucGCGCCAcgcgcucugaacgcGCucgucgGGCGcggaGCa -3'
miRNA:   3'- -GAGCGCGUGa--CGCGGU--------------UGua----CCGC----CG- -5'
7789 5' -58.2 NC_001973.1 + 99345 0.66 0.815509
Target:  5'- -aCGCGCGC-GCGUCGACuucgccCGGCg -3'
miRNA:   3'- gaGCGCGUGaCGCGGUUGuacc--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.