miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7794 3' -61.4 NC_001973.1 + 41102 0.65 0.733487
Target:  5'- uACGCGUccgccgagcucGaguuuggucauuuaGUUGUCGGCGGcGGCGGCGg -3'
miRNA:   3'- uUGCGCG-----------C--------------CAGCAGCUGCU-CCGCCGC- -5'
7794 3' -61.4 NC_001973.1 + 108741 0.66 0.726917
Target:  5'- -uCGuCGCGcUCGUCGACGcGGC-GCGg -3'
miRNA:   3'- uuGC-GCGCcAGCAGCUGCuCCGcCGC- -5'
7794 3' -61.4 NC_001973.1 + 122634 0.66 0.725975
Target:  5'- gGGCGC-CGG-CGUCGGuCGAGagagcaccugaacGCGGCGc -3'
miRNA:   3'- -UUGCGcGCCaGCAGCU-GCUC-------------CGCCGC- -5'
7794 3' -61.4 NC_001973.1 + 45612 0.66 0.721256
Target:  5'- gAGCGCGuCGG-CGaucagguccacgcgcUCGuCGAGcGCGGCGu -3'
miRNA:   3'- -UUGCGC-GCCaGC---------------AGCuGCUC-CGCCGC- -5'
7794 3' -61.4 NC_001973.1 + 23784 0.66 0.721256
Target:  5'- uACGCGCGcaucGUCGaguacggccacuucuUCGGCGAcGCGGCc -3'
miRNA:   3'- uUGCGCGC----CAGC---------------AGCUGCUcCGCCGc -5'
7794 3' -61.4 NC_001973.1 + 6511 0.66 0.717468
Target:  5'- gGGCgGCGCGGgCGUgcCGACGAuuuuGCGGCu -3'
miRNA:   3'- -UUG-CGCGCCaGCA--GCUGCUc---CGCCGc -5'
7794 3' -61.4 NC_001973.1 + 14019 0.66 0.717468
Target:  5'- uGGCGgGCGG-CGUCGGCGucGCGuuuGCu -3'
miRNA:   3'- -UUGCgCGCCaGCAGCUGCucCGC---CGc -5'
7794 3' -61.4 NC_001973.1 + 122547 0.66 0.717468
Target:  5'- cGGCgGCGCuGGUgGUgGugGuGGUGGUGg -3'
miRNA:   3'- -UUG-CGCG-CCAgCAgCugCuCCGCCGC- -5'
7794 3' -61.4 NC_001973.1 + 132439 0.66 0.717468
Target:  5'- --aGCGUGGUggaggCGcCGGCGGGGC-GCGg -3'
miRNA:   3'- uugCGCGCCA-----GCaGCUGCUCCGcCGC- -5'
7794 3' -61.4 NC_001973.1 + 55430 0.66 0.717468
Target:  5'- cGGCG-GCGG-CGggccCGACGGcGCGGCGg -3'
miRNA:   3'- -UUGCgCGCCaGCa---GCUGCUcCGCCGC- -5'
7794 3' -61.4 NC_001973.1 + 144452 0.66 0.717468
Target:  5'- cGCGCGCGuGUCGggCGGCGu-GCGGg- -3'
miRNA:   3'- uUGCGCGC-CAGCa-GCUGCucCGCCgc -5'
7794 3' -61.4 NC_001973.1 + 93558 0.66 0.717468
Target:  5'- aGAUGCGCGGcaCGcUGGcCGAGGUGaGCGg -3'
miRNA:   3'- -UUGCGCGCCa-GCaGCU-GCUCCGC-CGC- -5'
7794 3' -61.4 NC_001973.1 + 131768 0.66 0.707953
Target:  5'- uACaCGCGGUUGaCGACGGcGGcCGGCu -3'
miRNA:   3'- uUGcGCGCCAGCaGCUGCU-CC-GCCGc -5'
7794 3' -61.4 NC_001973.1 + 74786 0.66 0.707953
Target:  5'- --gGUGCGGUCGcCGGgGuGGGCGcGCa -3'
miRNA:   3'- uugCGCGCCAGCaGCUgC-UCCGC-CGc -5'
7794 3' -61.4 NC_001973.1 + 59878 0.66 0.707953
Target:  5'- cGCGCGCGGcCccaaCGGCGGcGCGGUGu -3'
miRNA:   3'- uUGCGCGCCaGca--GCUGCUcCGCCGC- -5'
7794 3' -61.4 NC_001973.1 + 95320 0.66 0.707953
Target:  5'- -cCGCGCGuUCGUCGAgucGGCGcGCGa -3'
miRNA:   3'- uuGCGCGCcAGCAGCUgcuCCGC-CGC- -5'
7794 3' -61.4 NC_001973.1 + 55630 0.66 0.69934
Target:  5'- gAGCGCGCGuGcaggucgcucaagcgCGUCGGaugggagcCGAGGCcGGCGg -3'
miRNA:   3'- -UUGCGCGC-Ca--------------GCAGCU--------GCUCCG-CCGC- -5'
7794 3' -61.4 NC_001973.1 + 24278 0.66 0.69838
Target:  5'- -cCGCGCGGgCGccUCGGCGAaugggcgaccacGGCGcGCGu -3'
miRNA:   3'- uuGCGCGCCaGC--AGCUGCU------------CCGC-CGC- -5'
7794 3' -61.4 NC_001973.1 + 5926 0.66 0.694536
Target:  5'- cGCcCGCGGUCGcgcgcacgaugcgCGACGcGGCcGGCGg -3'
miRNA:   3'- uUGcGCGCCAGCa------------GCUGCuCCG-CCGC- -5'
7794 3' -61.4 NC_001973.1 + 86731 0.66 0.688756
Target:  5'- -cUGCGCGG----CGACGAacGGCGGCGc -3'
miRNA:   3'- uuGCGCGCCagcaGCUGCU--CCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.