miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7794 5' -54.4 NC_001973.1 + 32566 0.66 0.958462
Target:  5'- cCGaCGC-CGCC-GUCGGcucgGCgCGCUGCg -3'
miRNA:   3'- -GC-GCGaGCGGaUAGUUa---UGgGCGACG- -5'
7794 5' -54.4 NC_001973.1 + 133337 0.66 0.958462
Target:  5'- gCGCGCgaCGCCgaccGUCGcgaACCCGCUcucgGCc -3'
miRNA:   3'- -GCGCGa-GCGGa---UAGUua-UGGGCGA----CG- -5'
7794 5' -54.4 NC_001973.1 + 23821 0.66 0.954646
Target:  5'- aCGCGgccCUCGCCgaguUCAAguacgaGCCCgaGCUGUg -3'
miRNA:   3'- -GCGC---GAGCGGau--AGUUa-----UGGG--CGACG- -5'
7794 5' -54.4 NC_001973.1 + 7847 0.66 0.954646
Target:  5'- gGCGCcgCGCCcGUCGAgcugGCgCGCcaggGCg -3'
miRNA:   3'- gCGCGa-GCGGaUAGUUa---UGgGCGa---CG- -5'
7794 5' -54.4 NC_001973.1 + 76681 0.66 0.954646
Target:  5'- aGCaGCUgGCCaacgaGUaCAugacGUGCCUGCUGCa -3'
miRNA:   3'- gCG-CGAgCGGa----UA-GU----UAUGGGCGACG- -5'
7794 5' -54.4 NC_001973.1 + 25097 0.66 0.954646
Target:  5'- gGUGCagcaCGCUcAUCGAgacccaggGCCUGCUGCc -3'
miRNA:   3'- gCGCGa---GCGGaUAGUUa-------UGGGCGACG- -5'
7794 5' -54.4 NC_001973.1 + 42952 0.66 0.954251
Target:  5'- gCGCGCUCGUCccagcgccGUCGAcgcgagaUGCugCCGUUGCg -3'
miRNA:   3'- -GCGCGAGCGGa-------UAGUU-------AUG--GGCGACG- -5'
7794 5' -54.4 NC_001973.1 + 45197 0.66 0.946317
Target:  5'- uGCGCUCGaUCUGgccgggcgCGAUGCgggCCGCgUGCu -3'
miRNA:   3'- gCGCGAGC-GGAUa-------GUUAUG---GGCG-ACG- -5'
7794 5' -54.4 NC_001973.1 + 135679 0.66 0.946317
Target:  5'- gGCGCUgGCCUG-CGGUuuggACgCGCaGCg -3'
miRNA:   3'- gCGCGAgCGGAUaGUUA----UGgGCGaCG- -5'
7794 5' -54.4 NC_001973.1 + 98216 0.66 0.941799
Target:  5'- uGCGCgCGCgCUAaauaaaaugaaUCGAUAuucguCUCGCUGCg -3'
miRNA:   3'- gCGCGaGCG-GAU-----------AGUUAU-----GGGCGACG- -5'
7794 5' -54.4 NC_001973.1 + 158698 0.66 0.941799
Target:  5'- aGCGCgCGCCUAcCGAcGCCCuGUUcGCc -3'
miRNA:   3'- gCGCGaGCGGAUaGUUaUGGG-CGA-CG- -5'
7794 5' -54.4 NC_001973.1 + 60128 0.66 0.941799
Target:  5'- uCGCGCcagccCGCCUA-CAAa--CCGCUGUu -3'
miRNA:   3'- -GCGCGa----GCGGAUaGUUaugGGCGACG- -5'
7794 5' -54.4 NC_001973.1 + 106967 0.66 0.941799
Target:  5'- gCGCGCUCGgCgugC---GCgCGCUGCa -3'
miRNA:   3'- -GCGCGAGCgGauaGuuaUGgGCGACG- -5'
7794 5' -54.4 NC_001973.1 + 120801 0.66 0.941799
Target:  5'- gCGCGCUgcugaCGCaCUAcgaUCGcgccGUGCCCGCggacGCg -3'
miRNA:   3'- -GCGCGA-----GCG-GAU---AGU----UAUGGGCGa---CG- -5'
7794 5' -54.4 NC_001973.1 + 131533 0.66 0.941799
Target:  5'- cCGC-CUCGCCUA-CGAUGaaCGCgucgGCg -3'
miRNA:   3'- -GCGcGAGCGGAUaGUUAUggGCGa---CG- -5'
7794 5' -54.4 NC_001973.1 + 79199 0.67 0.937041
Target:  5'- aCGCGCUCGCaaaUA-CAAUACUuuUGCgaccGCg -3'
miRNA:   3'- -GCGCGAGCGg--AUaGUUAUGG--GCGa---CG- -5'
7794 5' -54.4 NC_001973.1 + 33682 0.67 0.937041
Target:  5'- uGCGCUUGUUcGUCGacacgcccaaGUACuuGCUGUc -3'
miRNA:   3'- gCGCGAGCGGaUAGU----------UAUGggCGACG- -5'
7794 5' -54.4 NC_001973.1 + 9917 0.67 0.937041
Target:  5'- aCGCGUUCGugaCCUGccgCGGgaaguUGCCCGCcGCg -3'
miRNA:   3'- -GCGCGAGC---GGAUa--GUU-----AUGGGCGaCG- -5'
7794 5' -54.4 NC_001973.1 + 80082 0.67 0.932042
Target:  5'- gGCGCUUgGCCgucGUCGAgguCUCGUUGUa -3'
miRNA:   3'- gCGCGAG-CGGa--UAGUUau-GGGCGACG- -5'
7794 5' -54.4 NC_001973.1 + 83338 0.67 0.930495
Target:  5'- gGCGCUgaacaucCGCCccgacacgcccgAUCuGUGCCgGCUGCu -3'
miRNA:   3'- gCGCGA-------GCGGa-----------UAGuUAUGGgCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.