miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7796 3' -50.7 NC_001973.1 + 158000 0.66 0.995711
Target:  5'- cCGUCGAcCUgUUGAGauuuuucaaucGGGUGuGCGCCGc -3'
miRNA:   3'- -GCAGCUcGAgAACUU-----------UCUAC-UGCGGC- -5'
7796 3' -50.7 NC_001973.1 + 68356 0.66 0.994447
Target:  5'- uCGUCGGGCUUgucguuuugGAUGCCGg -3'
miRNA:   3'- -GCAGCUCGAGaacuuucuaCUGCGGC- -5'
7796 3' -50.7 NC_001973.1 + 18328 0.66 0.994196
Target:  5'- -----cGCUCUUGGucGGAUGGcCGCCGg -3'
miRNA:   3'- gcagcuCGAGAACUu-UCUACU-GCGGC- -5'
7796 3' -50.7 NC_001973.1 + 71775 0.67 0.99329
Target:  5'- cCGcCGAGCUCgaGGccGgcGGCGCCc -3'
miRNA:   3'- -GCaGCUCGAGaaCUuuCuaCUGCGGc -5'
7796 3' -50.7 NC_001973.1 + 86505 0.67 0.992275
Target:  5'- -cUCGAcGCUCUUGuccgccGAccUGGCGCCGc -3'
miRNA:   3'- gcAGCU-CGAGAACuuu---CU--ACUGCGGC- -5'
7796 3' -50.7 NC_001973.1 + 81012 0.67 0.989881
Target:  5'- gGUCGAGCacagCUUGAccGccGACGgCGg -3'
miRNA:   3'- gCAGCUCGa---GAACUuuCuaCUGCgGC- -5'
7796 3' -50.7 NC_001973.1 + 63042 0.67 0.989881
Target:  5'- uCGUCGGGCUCgUUGuuuu-UGAgCGCCa -3'
miRNA:   3'- -GCAGCUCGAG-AACuuucuACU-GCGGc -5'
7796 3' -50.7 NC_001973.1 + 87381 0.68 0.986943
Target:  5'- cCGUUGuuCUCgcagGAAcuGAUGACGCCGc -3'
miRNA:   3'- -GCAGCucGAGaa--CUUu-CUACUGCGGC- -5'
7796 3' -50.7 NC_001973.1 + 133080 0.68 0.985247
Target:  5'- uCGcCGAGCaUUUUG-GAGGUGACGCg- -3'
miRNA:   3'- -GCaGCUCG-AGAACuUUCUACUGCGgc -5'
7796 3' -50.7 NC_001973.1 + 51862 0.68 0.980494
Target:  5'- cCGUCGAGCacacgcccGAGAUGAuuCGCCGg -3'
miRNA:   3'- -GCAGCUCGagaacu--UUCUACU--GCGGC- -5'
7796 3' -50.7 NC_001973.1 + 74101 0.7 0.961643
Target:  5'- gGUCGuuaCUCUcGAAcacGGUGACGCCGg -3'
miRNA:   3'- gCAGCuc-GAGAaCUUu--CUACUGCGGC- -5'
7796 3' -50.7 NC_001973.1 + 157182 0.7 0.957955
Target:  5'- gGUCGAGCUUga-AGGGGUGuuUGCCGg -3'
miRNA:   3'- gCAGCUCGAGaacUUUCUACu-GCGGC- -5'
7796 3' -50.7 NC_001973.1 + 83100 0.7 0.954032
Target:  5'- cCGUCGcGCUCaUGcaaguGGAcGACGCCGa -3'
miRNA:   3'- -GCAGCuCGAGaACuu---UCUaCUGCGGC- -5'
7796 3' -50.7 NC_001973.1 + 52930 0.71 0.940809
Target:  5'- aCGUCGGGCg---GAAAGGUGuACGCg- -3'
miRNA:   3'- -GCAGCUCGagaaCUUUCUAC-UGCGgc -5'
7796 3' -50.7 NC_001973.1 + 96055 0.71 0.940809
Target:  5'- gGUCu-GUUCgcgUGGGAGAUcGACGCCGa -3'
miRNA:   3'- gCAGcuCGAGa--ACUUUCUA-CUGCGGC- -5'
7796 3' -50.7 NC_001973.1 + 37011 0.71 0.925347
Target:  5'- gCGgCGAGCUCgUUGAAaaacuuGGAcaauaUGACGCCGc -3'
miRNA:   3'- -GCaGCUCGAG-AACUU------UCU-----ACUGCGGC- -5'
7796 3' -50.7 NC_001973.1 + 56822 0.72 0.901217
Target:  5'- -aUCGGGCUgcUGcAGGAUGACGUCGg -3'
miRNA:   3'- gcAGCUCGAgaACuUUCUACUGCGGC- -5'
7796 3' -50.7 NC_001973.1 + 21304 0.72 0.897256
Target:  5'- uCGUCGGGCUUgcgcaucccGAUGAUGCCGc -3'
miRNA:   3'- -GCAGCUCGAGaacuuu---CUACUGCGGC- -5'
7796 3' -50.7 NC_001973.1 + 34550 1.09 0.010436
Target:  5'- uCGUCGAGCUCUUGAAAGAUGACGCCGu -3'
miRNA:   3'- -GCAGCUCGAGAACUUUCUACUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.