Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7796 | 5' | -51.7 | NC_001973.1 | + | 39416 | 0.66 | 0.987871 |
Target: 5'- gUCGGccgcGGUGAGGcGCguCGCGUCCa -3' miRNA: 3'- aAGCUa---CUACUUCaCGguGUGCAGGa -5' |
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7796 | 5' | -51.7 | NC_001973.1 | + | 14234 | 0.66 | 0.987871 |
Target: 5'- gUCGgcGAUGAGccacacGCCGCGCGUCg- -3' miRNA: 3'- aAGCuaCUACUUca----CGGUGUGCAGga -5' |
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7796 | 5' | -51.7 | NC_001973.1 | + | 139893 | 0.66 | 0.986247 |
Target: 5'- cUCGAgcgcgUGGUGucGGUGCUGCGCG-CCa -3' miRNA: 3'- aAGCU-----ACUACu-UCACGGUGUGCaGGa -5' |
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7796 | 5' | -51.7 | NC_001973.1 | + | 40687 | 0.67 | 0.96669 |
Target: 5'- gUCGAcGAgUGAAGgccGaCCGCGCGUCCc -3' miRNA: 3'- aAGCUaCU-ACUUCa--C-GGUGUGCAGGa -5' |
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7796 | 5' | -51.7 | NC_001973.1 | + | 6194 | 0.67 | 0.965698 |
Target: 5'- -aCGGUGGUGAucaaccggcggcgcGGUGCCgGCGCGgcgcCCUg -3' miRNA: 3'- aaGCUACUACU--------------UCACGG-UGUGCa---GGA- -5' |
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7796 | 5' | -51.7 | NC_001973.1 | + | 111287 | 0.69 | 0.937901 |
Target: 5'- cUCGGUGGUGGuGGcGCCGCGCGUg-- -3' miRNA: 3'- aAGCUACUACU-UCaCGGUGUGCAgga -5' |
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7796 | 5' | -51.7 | NC_001973.1 | + | 133847 | 0.7 | 0.889809 |
Target: 5'- -aCGAUGAUGcAcuUGCCGC-CGUCCg -3' miRNA: 3'- aaGCUACUAC-UucACGGUGuGCAGGa -5' |
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7796 | 5' | -51.7 | NC_001973.1 | + | 34584 | 1.05 | 0.012441 |
Target: 5'- cUUCGAUGAUGAAGUGCCACACGUCCUc -3' miRNA: 3'- -AAGCUACUACUUCACGGUGUGCAGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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