miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7797 3' -56.5 NC_001973.1 + 60414 0.66 0.91253
Target:  5'- uCUUGCaG-CGGGCGCGcUCGCUGg- -3'
miRNA:   3'- uGAACGaCaGCCCGUGCuAGUGGCgc -5'
7797 3' -56.5 NC_001973.1 + 42608 0.66 0.91253
Target:  5'- --gUGCggcgcgaGGGCGCGGUCGCCaCGg -3'
miRNA:   3'- ugaACGacag---CCCGUGCUAGUGGcGC- -5'
7797 3' -56.5 NC_001973.1 + 28076 0.66 0.91253
Target:  5'- ---cGCgcgCGGGCACGAcgaggacgUCAUUGCGg -3'
miRNA:   3'- ugaaCGacaGCCCGUGCU--------AGUGGCGC- -5'
7797 3' -56.5 NC_001973.1 + 31403 0.66 0.91253
Target:  5'- uGCUcgUGCUcGUCgucgugguGGGCACGAcCACCGg- -3'
miRNA:   3'- -UGA--ACGA-CAG--------CCCGUGCUaGUGGCgc -5'
7797 3' -56.5 NC_001973.1 + 45195 0.66 0.90653
Target:  5'- -gUUGCgcucgaucugGcCGGGCGCGAUgcggGCCGCGu -3'
miRNA:   3'- ugAACGa---------CaGCCCGUGCUAg---UGGCGC- -5'
7797 3' -56.5 NC_001973.1 + 67434 0.66 0.89384
Target:  5'- gACUUcGCgcagGUCGGGCAcCGggC-UCGCGg -3'
miRNA:   3'- -UGAA-CGa---CAGCCCGU-GCuaGuGGCGC- -5'
7797 3' -56.5 NC_001973.1 + 95563 0.66 0.887155
Target:  5'- ---cGCcGUcguggacuaCGGGCGCGcgCACCGCu -3'
miRNA:   3'- ugaaCGaCA---------GCCCGUGCuaGUGGCGc -5'
7797 3' -56.5 NC_001973.1 + 96559 0.66 0.880249
Target:  5'- --aUGUUcauUUGGGCgACGAUCugCGCGg -3'
miRNA:   3'- ugaACGAc--AGCCCG-UGCUAGugGCGC- -5'
7797 3' -56.5 NC_001973.1 + 109533 0.66 0.880249
Target:  5'- uCUUGCgcuuuUgGGGCGCGA--GCCGCGc -3'
miRNA:   3'- uGAACGac---AgCCCGUGCUagUGGCGC- -5'
7797 3' -56.5 NC_001973.1 + 3064 0.67 0.858245
Target:  5'- cGCUUgGCUGUCGGGCAgCGccuguAUCAUCa-- -3'
miRNA:   3'- -UGAA-CGACAGCCCGU-GC-----UAGUGGcgc -5'
7797 3' -56.5 NC_001973.1 + 44474 0.67 0.858245
Target:  5'- aACggGCgcUCGGGCGCGGgcaUCGgCGCGg -3'
miRNA:   3'- -UGaaCGacAGCCCGUGCU---AGUgGCGC- -5'
7797 3' -56.5 NC_001973.1 + 132461 0.67 0.84256
Target:  5'- gGCgcgGCcucGUCGGGCucgccGCGAUCACguaCGCGa -3'
miRNA:   3'- -UGaa-CGa--CAGCCCG-----UGCUAGUG---GCGC- -5'
7797 3' -56.5 NC_001973.1 + 43859 0.67 0.84256
Target:  5'- -gUUGCUGaaagucaggcCGGGCAUGAg-GCCGCGu -3'
miRNA:   3'- ugAACGACa---------GCCCGUGCUagUGGCGC- -5'
7797 3' -56.5 NC_001973.1 + 6104 0.67 0.834433
Target:  5'- aACgUGCgcaUGaCGGcGCGCGAgggCGCCGCGa -3'
miRNA:   3'- -UGaACG---ACaGCC-CGUGCUa--GUGGCGC- -5'
7797 3' -56.5 NC_001973.1 + 24130 0.67 0.834433
Target:  5'- gGCgaGCUcgCGGGUGCGcgCGCCGCc -3'
miRNA:   3'- -UGaaCGAcaGCCCGUGCuaGUGGCGc -5'
7797 3' -56.5 NC_001973.1 + 34352 0.67 0.834433
Target:  5'- ---cGCgaGUCGGGCGCG-UCGCCcuccGCGu -3'
miRNA:   3'- ugaaCGa-CAGCCCGUGCuAGUGG----CGC- -5'
7797 3' -56.5 NC_001973.1 + 23727 0.68 0.826124
Target:  5'- gGCUcGCUGaCGGGCccgACGGcgACCGCGc -3'
miRNA:   3'- -UGAaCGACaGCCCG---UGCUagUGGCGC- -5'
7797 3' -56.5 NC_001973.1 + 152335 0.68 0.800186
Target:  5'- cGCggUGCgcgGgcgGGGCGCGAUagCGCCGCGc -3'
miRNA:   3'- -UGa-ACGa--Cag-CCCGUGCUA--GUGGCGC- -5'
7797 3' -56.5 NC_001973.1 + 72901 0.68 0.800186
Target:  5'- ---cGCUcGUCGGGCGCGGa-GCaCGCGa -3'
miRNA:   3'- ugaaCGA-CAGCCCGUGCUagUG-GCGC- -5'
7797 3' -56.5 NC_001973.1 + 30490 0.68 0.79123
Target:  5'- ---cGCaGUCGGGCACGA-CGgUGCGc -3'
miRNA:   3'- ugaaCGaCAGCCCGUGCUaGUgGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.