miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7797 5' -55.6 NC_001973.1 + 55442 0.66 0.945036
Target:  5'- gCCCGaCgGCGCGGCGG-AUCGuc-UCGa -3'
miRNA:   3'- -GGGC-GgCGUGUCGCCuUAGCcauAGU- -5'
7797 5' -55.6 NC_001973.1 + 4643 0.66 0.945036
Target:  5'- cCCUGUCG-GCGGCGGGcgccGUCGGcgaGUCGg -3'
miRNA:   3'- -GGGCGGCgUGUCGCCU----UAGCCa--UAGU- -5'
7797 5' -55.6 NC_001973.1 + 98250 0.66 0.945036
Target:  5'- uCUCGCUGCGCGGCGcuGGUCGcGU-UCGc -3'
miRNA:   3'- -GGGCGGCGUGUCGCc-UUAGC-CAuAGU- -5'
7797 5' -55.6 NC_001973.1 + 47748 0.66 0.945036
Target:  5'- gCgGCCGCcCGGCGGAAUCa------ -3'
miRNA:   3'- gGgCGGCGuGUCGCCUUAGccauagu -5'
7797 5' -55.6 NC_001973.1 + 38640 0.66 0.940525
Target:  5'- aCCgGCCGUgcucGCGGCGcAGUCGGUc--- -3'
miRNA:   3'- -GGgCGGCG----UGUCGCcUUAGCCAuagu -5'
7797 5' -55.6 NC_001973.1 + 112849 0.66 0.940525
Target:  5'- gCCCG-CGCACAGCGccagcUCGGgcuugaagAUCAg -3'
miRNA:   3'- -GGGCgGCGUGUCGCcuu--AGCCa-------UAGU- -5'
7797 5' -55.6 NC_001973.1 + 30367 0.66 0.940525
Target:  5'- gCCGCCgGCGCGGCGac-UCGGgugCGg -3'
miRNA:   3'- gGGCGG-CGUGUCGCcuuAGCCauaGU- -5'
7797 5' -55.6 NC_001973.1 + 94408 0.66 0.935782
Target:  5'- gCCCGCgGCGCcgcccggaccGGCGGcGUUGGcccGUCGc -3'
miRNA:   3'- -GGGCGgCGUG----------UCGCCuUAGCCa--UAGU- -5'
7797 5' -55.6 NC_001973.1 + 15349 0.66 0.935782
Target:  5'- --aGCgGCGCGGCGuug-CGGUGUCGu -3'
miRNA:   3'- gggCGgCGUGUCGCcuuaGCCAUAGU- -5'
7797 5' -55.6 NC_001973.1 + 67597 0.66 0.935294
Target:  5'- gCCGUCGUucgguugGCGGCGGAGcUGGUGcCGg -3'
miRNA:   3'- gGGCGGCG-------UGUCGCCUUaGCCAUaGU- -5'
7797 5' -55.6 NC_001973.1 + 24939 0.66 0.930804
Target:  5'- aCgCGCCGUACAGa-GGAUCGGcaaggcgGUCGa -3'
miRNA:   3'- -GgGCGGCGUGUCgcCUUAGCCa------UAGU- -5'
7797 5' -55.6 NC_001973.1 + 103223 0.66 0.930804
Target:  5'- aCUCGCCGacgACGGCGGAcgccAUCGcGUGg-- -3'
miRNA:   3'- -GGGCGGCg--UGUCGCCU----UAGC-CAUagu -5'
7797 5' -55.6 NC_001973.1 + 109565 0.66 0.930804
Target:  5'- gCCGgCGCGgGGCGGGuuUCGGgcgCGa -3'
miRNA:   3'- gGGCgGCGUgUCGCCUu-AGCCauaGU- -5'
7797 5' -55.6 NC_001973.1 + 109122 0.66 0.920146
Target:  5'- aCCGCCGCgGCGGCGGccucUUGGg--CGc -3'
miRNA:   3'- gGGCGGCG-UGUCGCCuu--AGCCauaGU- -5'
7797 5' -55.6 NC_001973.1 + 95026 0.67 0.914465
Target:  5'- gCCGauGUGCGGCGGGGaCGGcAUCAa -3'
miRNA:   3'- gGGCggCGUGUCGCCUUaGCCaUAGU- -5'
7797 5' -55.6 NC_001973.1 + 52850 0.67 0.914465
Target:  5'- aCgGCCGCGC-GCGGccGGUCGGUc--- -3'
miRNA:   3'- gGgCGGCGUGuCGCC--UUAGCCAuagu -5'
7797 5' -55.6 NC_001973.1 + 6050 0.67 0.913884
Target:  5'- -aCGCgCGCGCucuuccaAGUGGAaaaggAUCGGUAUCu -3'
miRNA:   3'- ggGCG-GCGUG-------UCGCCU-----UAGCCAUAGu -5'
7797 5' -55.6 NC_001973.1 + 135919 0.67 0.902406
Target:  5'- aUCGUCGCAgAGCGGGcgCGGc---- -3'
miRNA:   3'- gGGCGGCGUgUCGCCUuaGCCauagu -5'
7797 5' -55.6 NC_001973.1 + 95418 0.67 0.896031
Target:  5'- aCCCGCUGCugGGC-GAcgCGGa---- -3'
miRNA:   3'- -GGGCGGCGugUCGcCUuaGCCauagu -5'
7797 5' -55.6 NC_001973.1 + 59879 0.67 0.896031
Target:  5'- gCgCGCgGCcccaACGGCGGcg-CGGUGUCGg -3'
miRNA:   3'- -GgGCGgCG----UGUCGCCuuaGCCAUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.