miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
780 3' -56.2 NC_000852.3 + 197455 1.09 0.006839
Target:  5'- cCGAAACCCGCUCCGAAACCCGCUCCGa -3'
miRNA:   3'- -GCUUUGGGCGAGGCUUUGGGCGAGGC- -5'
780 3' -56.2 NC_000852.3 + 76140 0.86 0.189156
Target:  5'- -uAAACCCGCUCCcAAACCCGCUCCc -3'
miRNA:   3'- gcUUUGGGCGAGGcUUUGGGCGAGGc -5'
780 3' -56.2 NC_000852.3 + 24239 0.84 0.249345
Target:  5'- -uAAACCCGCaCCGAAGCCCGUUCCa -3'
miRNA:   3'- gcUUUGGGCGaGGCUUUGGGCGAGGc -5'
780 3' -56.2 NC_000852.3 + 104628 0.66 0.98177
Target:  5'- uGAAACaCCGCUCgCGGAAUUCaUUCCa -3'
miRNA:   3'- gCUUUG-GGCGAG-GCUUUGGGcGAGGc -5'
780 3' -56.2 NC_000852.3 + 158368 0.96 0.04867
Target:  5'- cCGAAACCCGCaCCGAAACCCGCUCCu -3'
miRNA:   3'- -GCUUUGGGCGaGGCUUUGGGCGAGGc -5'
780 3' -56.2 NC_000852.3 + 197504 0.94 0.067656
Target:  5'- nGAAACCCGCUCCuAAGCCCGCUCCu -3'
miRNA:   3'- gCUUUGGGCGAGGcUUUGGGCGAGGc -5'
780 3' -56.2 NC_000852.3 + 158320 0.92 0.084792
Target:  5'- cCGAAACCUGCaCCGAAACCCGCUCCu -3'
miRNA:   3'- -GCUUUGGGCGaGGCUUUGGGCGAGGc -5'
780 3' -56.2 NC_000852.3 + 197323 0.91 0.097467
Target:  5'- cCGAAGCCCGCcccuaaacccgcaCCGAAACCCGCUCCGa -3'
miRNA:   3'- -GCUUUGGGCGa------------GGCUUUGGGCGAGGC- -5'
780 3' -56.2 NC_000852.3 + 24309 0.87 0.172123
Target:  5'- cCGAAACCUGCUCCcAAACCUGCUCCc -3'
miRNA:   3'- -GCUUUGGGCGAGGcUUUGGGCGAGGc -5'
780 3' -56.2 NC_000852.3 + 75010 0.86 0.189156
Target:  5'- -uAAACCCGCUCCcAAACCCGCUCCc -3'
miRNA:   3'- gcUUUGGGCGAGGcUUUGGGCGAGGc -5'
780 3' -56.2 NC_000852.3 + 197539 0.87 0.172123
Target:  5'- cCGAAACCCGCaCCGAAACCCGCaCCa -3'
miRNA:   3'- -GCUUUGGGCGaGGCUUUGGGCGaGGc -5'
780 3' -56.2 NC_000852.3 + 76212 0.87 0.168084
Target:  5'- -cAAACCCGCUCCuAAACCCGCUCCu -3'
miRNA:   3'- gcUUUGGGCGAGGcUUUGGGCGAGGc -5'
780 3' -56.2 NC_000852.3 + 197480 1.08 0.00887
Target:  5'- nGAAACCCGCUCCGAAACCCGCUCCGa -3'
miRNA:   3'- gCUUUGGGCGAGGCUUUGGGCGAGGC- -5'
780 3' -56.2 NC_000852.3 + 158262 0.87 0.176248
Target:  5'- -uAAACCCGCaCCGAAGCCCGCUCCc -3'
miRNA:   3'- gcUUUGGGCGaGGCUUUGGGCGAGGc -5'
780 3' -56.2 NC_000852.3 + 197371 1 0.029168
Target:  5'- cCGAAGCCCGCaCCGAAACCCGCUCCGa -3'
miRNA:   3'- -GCUUUGGGCGaGGCUUUGGGCGAGGC- -5'
780 3' -56.2 NC_000852.3 + 122676 0.91 0.100906
Target:  5'- cCGAAACCCGCgCCGAAACCCGCaCCGa -3'
miRNA:   3'- -GCUUUGGGCGaGGCUUUGGGCGaGGC- -5'
780 3' -56.2 NC_000852.3 + 158416 0.87 0.180461
Target:  5'- cCGAAACCCGCgCCGAAACCCGUaCCa -3'
miRNA:   3'- -GCUUUGGGCGaGGCUUUGGGCGaGGc -5'
780 3' -56.2 NC_000852.3 + 197197 0.85 0.232952
Target:  5'- cCGAAACCCGUgccuauaCCGAAACCCGCgCCGa -3'
miRNA:   3'- -GCUUUGGGCGa------GGCUUUGGGCGaGGC- -5'
780 3' -56.2 NC_000852.3 + 197239 0.97 0.042845
Target:  5'- cCGAAACCCGCUCCGAAACCUGCgCCGa -3'
miRNA:   3'- -GCUUUGGGCGAGGCUUUGGGCGaGGC- -5'
780 3' -56.2 NC_000852.3 + 122640 0.92 0.084792
Target:  5'- cCGAAGCCCGCgCCGAAACCCGCgCCGa -3'
miRNA:   3'- -GCUUUGGGCGaGGCUUUGGGCGaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.