miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
780 5' -57.1 NC_000852.3 + 76137 0.77 0.464807
Target:  5'- cCCuAAACCCGCUCCcAAaCCCGCUCc -3'
miRNA:   3'- aGGcUUUGGGCGAGGaUUcGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 197238 0.77 0.438735
Target:  5'- gCCGAAACCCGCUCCgaaaCCUGCg- -3'
miRNA:   3'- aGGCUUUGGGCGAGGauucGGGCGag -5'
780 5' -57.1 NC_000852.3 + 122543 0.76 0.528534
Target:  5'- aCCGAAGCCUGCaCCgAAGCCUGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 109792 0.76 0.528534
Target:  5'- uUCCcaaAAACCCGCUCCaAAaCCCGCUCc -3'
miRNA:   3'- -AGGc--UUUGGGCGAGGaUUcGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 270849 0.75 0.547353
Target:  5'- gCCcucACCgGgUCCUAAGCCCGCUCc -3'
miRNA:   3'- aGGcuuUGGgCgAGGAUUCGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 24223 0.75 0.56638
Target:  5'- cUCCaAAACCCGCcCCUAaacccgcaccgaAGCCCGUUCc -3'
miRNA:   3'- -AGGcUUUGGGCGaGGAU------------UCGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 241537 0.74 0.633973
Target:  5'- aCCGAAACCCGCgCCaGAaCCCGCg- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 273637 0.74 0.633973
Target:  5'- aCCGGGACCUGCUCCUGuGCCgagaccgagCGCg- -3'
miRNA:   3'- aGGCUUUGGGCGAGGAUuCGG---------GCGag -5'
780 5' -57.1 NC_000852.3 + 122675 0.73 0.691923
Target:  5'- gCCGAAACCCGCgCCgaaaCCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGauucGGGCGag -5'
780 5' -57.1 NC_000852.3 + 122567 0.73 0.691923
Target:  5'- aCCGAAGCCUGCaCCgAAGCCUGCn- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 122651 0.73 0.691923
Target:  5'- gCCGAAACCCGCgCCgaaaCCCGCg- -3'
miRNA:   3'- aGGCUUUGGGCGaGGauucGGGCGag -5'
780 5' -57.1 NC_000852.3 + 241489 0.73 0.701468
Target:  5'- aCCGAAACCCGCaCCaGAaCCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 22033 0.72 0.729758
Target:  5'- aCCGAAACCCGCaCCgaaaCCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGauucGGGCGag -5'
780 5' -57.1 NC_000852.3 + 22057 0.72 0.729758
Target:  5'- aCCGAAACCCGCaCCgaaaCCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGauucGGGCGag -5'
780 5' -57.1 NC_000852.3 + 241597 0.72 0.729758
Target:  5'- aCCGAAACCCGCaCCgaaaCCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGauucGGGCGag -5'
780 5' -57.1 NC_000852.3 + 156333 0.72 0.710961
Target:  5'- uUCCGcgcCCUGCaaaUCCUAguggugucaaAGCCCGCUCg -3'
miRNA:   3'- -AGGCuuuGGGCG---AGGAU----------UCGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 76257 0.72 0.739046
Target:  5'- aCCGAAACCCGCaCCcAAaCCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 241573 0.72 0.729758
Target:  5'- aCCGAAACCCGCaCCgaaaCCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGauucGGGCGag -5'
780 5' -57.1 NC_000852.3 + 188857 0.71 0.801282
Target:  5'- aCCuAAACCCGCgCCUAAaCCCGCg- -3'
miRNA:   3'- aGGcUUUGGGCGaGGAUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 188918 0.71 0.784075
Target:  5'- cUCCuAAACCCGCaCCUAAaCCCGCa- -3'
miRNA:   3'- -AGGcUUUGGGCGaGGAUUcGGGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.