Results 61 - 66 of 66 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 780 | 5' | -57.1 | NC_000852.3 | + | 24332 | 0.68 | 0.909304 |
|
Target: 5'- nCCcAAACCCGUUCCaAAaCCCGUUCc -3' miRNA: 3'- aGGcUUUGGGCGAGGaUUcGGGCGAG- -5' |
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| 780 | 5' | -57.1 | NC_000852.3 | + | 24308 | 0.79 | 0.350851 |
|
Target: 5'- gCCGAAACCUGCUCCcAAaCCUGCUCc -3' miRNA: 3'- aGGCUUUGGGCGAGGaUUcGGGCGAG- -5' |
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| 780 | 5' | -57.1 | NC_000852.3 | + | 24223 | 0.75 | 0.56638 |
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Target: 5'- cUCCaAAACCCGCcCCUAaacccgcaccgaAGCCCGUUCc -3' miRNA: 3'- -AGGcUUUGGGCGaGGAU------------UCGGGCGAG- -5' |
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| 780 | 5' | -57.1 | NC_000852.3 | + | 22057 | 0.72 | 0.729758 |
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Target: 5'- aCCGAAACCCGCaCCgaaaCCCGCa- -3' miRNA: 3'- aGGCUUUGGGCGaGGauucGGGCGag -5' |
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| 780 | 5' | -57.1 | NC_000852.3 | + | 22033 | 0.72 | 0.729758 |
|
Target: 5'- aCCGAAACCCGCaCCgaaaCCCGCa- -3' miRNA: 3'- aGGCUUUGGGCGaGGauucGGGCGag -5' |
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| 780 | 5' | -57.1 | NC_000852.3 | + | 1382 | 0.69 | 0.856809 |
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Target: 5'- cUuuGGGcUCCGCUCCUGgucgaacaugGGCuCCGCUCc -3' miRNA: 3'- -AggCUUuGGGCGAGGAU----------UCG-GGCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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