miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7801 3' -54.2 NC_001973.1 + 96754 0.66 0.95577
Target:  5'- cGGAGcGCcGGCgaGUCGggcgGCGUGGCg -3'
miRNA:   3'- aCCUUuUGaCCGa-CGGCaa--CGCGCUG- -5'
7801 3' -54.2 NC_001973.1 + 4786 0.66 0.95338
Target:  5'- aGGAAGGCcGuGUUGCCGaUGUccacgagcgcguacgGCGACa -3'
miRNA:   3'- aCCUUUUGaC-CGACGGCaACG---------------CGCUG- -5'
7801 3' -54.2 NC_001973.1 + 5157 0.66 0.951739
Target:  5'- aGGcccAGCUGGUUGgUGUccgGCGCGAg -3'
miRNA:   3'- aCCuu-UUGACCGACgGCAa--CGCGCUg -5'
7801 3' -54.2 NC_001973.1 + 140863 0.66 0.951739
Target:  5'- gUGGAuuGGACgGGCgUGCgCaucUGCGCGGCg -3'
miRNA:   3'- -ACCU--UUUGaCCG-ACG-Gca-ACGCGCUG- -5'
7801 3' -54.2 NC_001973.1 + 146007 0.66 0.951739
Target:  5'- cGGGGAGCgGGUccGCCGgcucgaGCGCGGg -3'
miRNA:   3'- aCCUUUUGaCCGa-CGGCaa----CGCGCUg -5'
7801 3' -54.2 NC_001973.1 + 129700 0.66 0.951739
Target:  5'- cGGAauGAACUGGUgGCCG--GCGC-ACa -3'
miRNA:   3'- aCCU--UUUGACCGaCGGCaaCGCGcUG- -5'
7801 3' -54.2 NC_001973.1 + 27857 0.66 0.94747
Target:  5'- cGGc--GCUGGCggccgcgGCCGcggGCGCGGg -3'
miRNA:   3'- aCCuuuUGACCGa------CGGCaa-CGCGCUg -5'
7801 3' -54.2 NC_001973.1 + 132434 0.66 0.94747
Target:  5'- aGGcGAGCgUGGUggaggcGCCGgcgggGCGCGGCc -3'
miRNA:   3'- aCCuUUUG-ACCGa-----CGGCaa---CGCGCUG- -5'
7801 3' -54.2 NC_001973.1 + 61110 0.66 0.942957
Target:  5'- cGGAGcAGC-GGC-GgCGggGCGCGGCg -3'
miRNA:   3'- aCCUU-UUGaCCGaCgGCaaCGCGCUG- -5'
7801 3' -54.2 NC_001973.1 + 102477 0.66 0.938201
Target:  5'- gUGGAGAuuuACgGGCUcGCCGacaCGCGGCc -3'
miRNA:   3'- -ACCUUU---UGaCCGA-CGGCaacGCGCUG- -5'
7801 3' -54.2 NC_001973.1 + 79608 0.66 0.938201
Target:  5'- aUGGAGAACaGGCUGUgauaGUUGaCG-GGCg -3'
miRNA:   3'- -ACCUUUUGaCCGACGg---CAAC-GCgCUG- -5'
7801 3' -54.2 NC_001973.1 + 24162 0.67 0.927945
Target:  5'- cGGc--GCUGGCgcUGCCGcUGCggccGCGGCg -3'
miRNA:   3'- aCCuuuUGACCG--ACGGCaACG----CGCUG- -5'
7801 3' -54.2 NC_001973.1 + 1319 0.67 0.922444
Target:  5'- uUGuGAAACac-CUGCCGUUGUGCGAUu -3'
miRNA:   3'- -ACcUUUUGaccGACGGCAACGCGCUG- -5'
7801 3' -54.2 NC_001973.1 + 110074 0.67 0.922444
Target:  5'- gUGGAGGAC-GcGCUGUUcgcGCGCGACg -3'
miRNA:   3'- -ACCUUUUGaC-CGACGGcaaCGCGCUG- -5'
7801 3' -54.2 NC_001973.1 + 83750 0.67 0.910699
Target:  5'- uUGGAggugGAGCUGGaCcGCgCGcaGCGCGACc -3'
miRNA:   3'- -ACCU----UUUGACC-GaCG-GCaaCGCGCUG- -5'
7801 3' -54.2 NC_001973.1 + 58766 0.67 0.908852
Target:  5'- gUGGAAGaguGCcGGCgcGCCGUggugaaccugagcgUGCGCGAg -3'
miRNA:   3'- -ACCUUU---UGaCCGa-CGGCA--------------ACGCGCUg -5'
7801 3' -54.2 NC_001973.1 + 82074 0.67 0.904456
Target:  5'- uUGGcgGugUGGCUcaGCCGauaGuCGCGACa -3'
miRNA:   3'- -ACCuuUugACCGA--CGGCaa-C-GCGCUG- -5'
7801 3' -54.2 NC_001973.1 + 84170 0.68 0.900594
Target:  5'- cGGAGAGC-GGCgccGCCGaccugcaaaaucgcaUcGCGCGACu -3'
miRNA:   3'- aCCUUUUGaCCGa--CGGC---------------AaCGCGCUG- -5'
7801 3' -54.2 NC_001973.1 + 142927 0.68 0.884283
Target:  5'- cGGAGacAugUGGCUGCUGUUG-GCc-- -3'
miRNA:   3'- aCCUU--UugACCGACGGCAACgCGcug -5'
7801 3' -54.2 NC_001973.1 + 109463 0.68 0.869667
Target:  5'- aGGucGAGCgUGGCga-CGUUGCGCGAg -3'
miRNA:   3'- aCCu-UUUG-ACCGacgGCAACGCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.