miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7801 5' -65.1 NC_001973.1 + 133522 0.66 0.556624
Target:  5'- cGGGCagcagaGgcgaggGCCGCGCguaaucguaguuGCGCaGCUCGCUg -3'
miRNA:   3'- -CCCGg-----Ca-----CGGCGCG------------CGCGaCGGGUGG- -5'
7801 5' -65.1 NC_001973.1 + 118426 0.66 0.556624
Target:  5'- uGGCCGccggGCUcgacgaGCGCaaGCGCgacaaauggcGCCCGCCg -3'
miRNA:   3'- cCCGGCa---CGG------CGCG--CGCGa---------CGGGUGG- -5'
7801 5' -65.1 NC_001973.1 + 119440 0.66 0.556624
Target:  5'- cGGCCacucgaucGCCGCGCcCGCcGCCgcCGCCg -3'
miRNA:   3'- cCCGGca------CGGCGCGcGCGaCGG--GUGG- -5'
7801 5' -65.1 NC_001973.1 + 4576 0.66 0.556624
Target:  5'- uGGCCGUagaaCGCGauuccggcccCGCUGCCCGCg -3'
miRNA:   3'- cCCGGCAcg--GCGCgc--------GCGACGGGUGg -5'
7801 5' -65.1 NC_001973.1 + 37778 0.66 0.556624
Target:  5'- gGGGgCGccGCCGCGCGgCGCU-CUCGuuCCa -3'
miRNA:   3'- -CCCgGCa-CGGCGCGC-GCGAcGGGU--GG- -5'
7801 5' -65.1 NC_001973.1 + 32035 0.66 0.553816
Target:  5'- aGGGCagacacaugcgcauCGcguUGCCgGCgGUGCGCUGCCaGCCc -3'
miRNA:   3'- -CCCG--------------GC---ACGG-CG-CGCGCGACGGgUGG- -5'
7801 5' -65.1 NC_001973.1 + 117838 0.66 0.547281
Target:  5'- aGGCgGUGCUGCuGUGCGCcagCCGCUc -3'
miRNA:   3'- cCCGgCACGGCG-CGCGCGacgGGUGG- -5'
7801 5' -65.1 NC_001973.1 + 126102 0.66 0.547281
Target:  5'- ---gCGUGCCGaCGCGUGa-GCCCgGCCg -3'
miRNA:   3'- cccgGCACGGC-GCGCGCgaCGGG-UGG- -5'
7801 5' -65.1 NC_001973.1 + 89739 0.66 0.547281
Target:  5'- cGGCuCGUacacaaacacGuuGCGCGgGUgcagGUCCACCg -3'
miRNA:   3'- cCCG-GCA----------CggCGCGCgCGa---CGGGUGG- -5'
7801 5' -65.1 NC_001973.1 + 97004 0.66 0.547281
Target:  5'- -cGCCucGUCGCGCGcCGUcGCCCugCa -3'
miRNA:   3'- ccCGGcaCGGCGCGC-GCGaCGGGugG- -5'
7801 5' -65.1 NC_001973.1 + 17939 0.66 0.537989
Target:  5'- uGGG-CGUGaCGCGCGCGUucUGCUgGgCa -3'
miRNA:   3'- -CCCgGCACgGCGCGCGCG--ACGGgUgG- -5'
7801 5' -65.1 NC_001973.1 + 62005 0.66 0.537989
Target:  5'- uGGGUgGUuCUGCG-GCGCaaccGCCCGCUg -3'
miRNA:   3'- -CCCGgCAcGGCGCgCGCGa---CGGGUGG- -5'
7801 5' -65.1 NC_001973.1 + 136449 0.66 0.537989
Target:  5'- gGGGCgCGUaggGCCGCGCGaaguagGCCacguaGCCg -3'
miRNA:   3'- -CCCG-GCA---CGGCGCGCgcga--CGGg----UGG- -5'
7801 5' -65.1 NC_001973.1 + 108966 0.66 0.537989
Target:  5'- cGGGCCGcuUGuuGCacaugacgaGCGCGUugaUGUCC-CCg -3'
miRNA:   3'- -CCCGGC--ACggCG---------CGCGCG---ACGGGuGG- -5'
7801 5' -65.1 NC_001973.1 + 146948 0.66 0.537989
Target:  5'- cGGCCGaggugaagaUGuuGCGCa---UGCCCGCCg -3'
miRNA:   3'- cCCGGC---------ACggCGCGcgcgACGGGUGG- -5'
7801 5' -65.1 NC_001973.1 + 74515 0.66 0.537989
Target:  5'- cGGGacacuCGagcaCCGCGUGCGagccGCCCGCCa -3'
miRNA:   3'- -CCCg----GCac--GGCGCGCGCga--CGGGUGG- -5'
7801 5' -65.1 NC_001973.1 + 159765 0.66 0.535212
Target:  5'- cGGCaCGUaGCCcucgucgcaccgcaGgGCGUGCUGCgCCACg -3'
miRNA:   3'- cCCG-GCA-CGG--------------CgCGCGCGACG-GGUGg -5'
7801 5' -65.1 NC_001973.1 + 28960 0.66 0.534287
Target:  5'- gGGGCCGgcagucggGCgGCGaCGCGUUGUagucggggaagggCGCCg -3'
miRNA:   3'- -CCCGGCa-------CGgCGC-GCGCGACGg------------GUGG- -5'
7801 5' -65.1 NC_001973.1 + 57790 0.66 0.528752
Target:  5'- -cGCCGUGCCGaacuCGCaGCU-CCCGCUc -3'
miRNA:   3'- ccCGGCACGGCgc--GCG-CGAcGGGUGG- -5'
7801 5' -65.1 NC_001973.1 + 56335 0.66 0.528752
Target:  5'- cGGcGCCGcGCuCGCGgcCGCGCUcggGCCCcgacucggcGCCg -3'
miRNA:   3'- -CC-CGGCaCG-GCGC--GCGCGA---CGGG---------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.