miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7803 3' -54.7 NC_001973.1 + 146033 0.65 0.959731
Target:  5'- gCGGGUcgACGGACGGGgcgagucuaaggUUGgGCCGc- -3'
miRNA:   3'- -GCCCG--UGCCUGCUCaa----------AACgUGGCac -5'
7803 3' -54.7 NC_001973.1 + 109567 0.66 0.953691
Target:  5'- -cGGCGCgGGGCGGGUUUcggGCgcgaGCCGUc -3'
miRNA:   3'- gcCCGUG-CCUGCUCAAAa--CG----UGGCAc -5'
7803 3' -54.7 NC_001973.1 + 111280 0.66 0.953691
Target:  5'- uGGGCAacuCGGugGuGGUg--GCGCCGc- -3'
miRNA:   3'- gCCCGU---GCCugC-UCAaaaCGUGGCac -5'
7803 3' -54.7 NC_001973.1 + 125641 0.66 0.94962
Target:  5'- gCGGGCcguuCGGGuCGAGgccugUGUACaCGUGc -3'
miRNA:   3'- -GCCCGu---GCCU-GCUCaaa--ACGUG-GCAC- -5'
7803 3' -54.7 NC_001973.1 + 28081 0.66 0.945319
Target:  5'- gCGGGCAC-GACGAGgacgucaUUGCGgCGg- -3'
miRNA:   3'- -GCCCGUGcCUGCUCaa-----AACGUgGCac -5'
7803 3' -54.7 NC_001973.1 + 16111 0.66 0.942626
Target:  5'- gGGGCaggcaauaguugaauACGGGCGAGcac-GCGCCGc- -3'
miRNA:   3'- gCCCG---------------UGCCUGCUCaaaaCGUGGCac -5'
7803 3' -54.7 NC_001973.1 + 53409 0.66 0.940783
Target:  5'- -cGGCACGGGCGGa----GCGCCGg- -3'
miRNA:   3'- gcCCGUGCCUGCUcaaaaCGUGGCac -5'
7803 3' -54.7 NC_001973.1 + 5839 0.66 0.940783
Target:  5'- uGGGCGCGucguucGGCGAGcgcacGCGCCGg- -3'
miRNA:   3'- gCCCGUGC------CUGCUCaaaa-CGUGGCac -5'
7803 3' -54.7 NC_001973.1 + 133473 0.67 0.936011
Target:  5'- aCGGaGCgccaGCGGGCGAGcacgcucGCGCCGUc -3'
miRNA:   3'- -GCC-CG----UGCCUGCUCaaaa---CGUGGCAc -5'
7803 3' -54.7 NC_001973.1 + 56508 0.67 0.936011
Target:  5'- uCGGGCG-GGGCGGGcUcgGCGCCa-- -3'
miRNA:   3'- -GCCCGUgCCUGCUCaAaaCGUGGcac -5'
7803 3' -54.7 NC_001973.1 + 89536 0.67 0.931002
Target:  5'- aGGGCgguGGGCGAGgcggUGCGCCc-- -3'
miRNA:   3'- gCCCGug-CCUGCUCaaa-ACGUGGcac -5'
7803 3' -54.7 NC_001973.1 + 78188 0.67 0.931002
Target:  5'- uGGGCACGGgcaugcgcaucaACGAGgc--GCGCCa-- -3'
miRNA:   3'- gCCCGUGCC------------UGCUCaaaaCGUGGcac -5'
7803 3' -54.7 NC_001973.1 + 56454 0.67 0.925753
Target:  5'- uCGGGCG-GGGCGGGcucgGCGCCa-- -3'
miRNA:   3'- -GCCCGUgCCUGCUCaaaaCGUGGcac -5'
7803 3' -54.7 NC_001973.1 + 56481 0.67 0.925753
Target:  5'- uCGGGCG-GGGCGGGcucgGCGCCa-- -3'
miRNA:   3'- -GCCCGUgCCUGCUCaaaaCGUGGcac -5'
7803 3' -54.7 NC_001973.1 + 74688 0.67 0.925753
Target:  5'- aCGGGCACGGGCGcGcaUUUcGCgGCCGc- -3'
miRNA:   3'- -GCCCGUGCCUGCuC--AAAaCG-UGGCac -5'
7803 3' -54.7 NC_001973.1 + 35233 0.67 0.925753
Target:  5'- -cGGCGCGGACGAGa--UGUuCCGcUGg -3'
miRNA:   3'- gcCCGUGCCUGCUCaaaACGuGGC-AC- -5'
7803 3' -54.7 NC_001973.1 + 120589 0.67 0.925753
Target:  5'- aCGGGCGCGc-CGAGUcgcggUGCGCCu-- -3'
miRNA:   3'- -GCCCGUGCcuGCUCAaa---ACGUGGcac -5'
7803 3' -54.7 NC_001973.1 + 135930 0.67 0.91914
Target:  5'- gCGGGCGCGG-CGAuGgcgcgccaagUGCGCCaaGUGg -3'
miRNA:   3'- -GCCCGUGCCuGCU-Caaa-------ACGUGG--CAC- -5'
7803 3' -54.7 NC_001973.1 + 96753 0.68 0.882404
Target:  5'- cCGGaGCGCcGGCGAGUcggGCGgCGUGg -3'
miRNA:   3'- -GCC-CGUGcCUGCUCAaaaCGUgGCAC- -5'
7803 3' -54.7 NC_001973.1 + 72907 0.69 0.865731
Target:  5'- uCGGGCGCGGAgcacgcgaucguuuCGAacGUgg-GCACCGa- -3'
miRNA:   3'- -GCCCGUGCCU--------------GCU--CAaaaCGUGGCac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.