miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7803 5' -56.3 NC_001973.1 + 104644 0.66 0.919617
Target:  5'- gAGCGCGACGCcgucgaacuccaaguAGCGCGcGGc--GACGc -3'
miRNA:   3'- -UCGUGCUGCG---------------UCGCGC-CCaacUUGCu -5'
7803 5' -56.3 NC_001973.1 + 133121 0.66 0.917359
Target:  5'- gAGCGCG-CGUuugAGCGCGGGUaucaauuGCGu -3'
miRNA:   3'- -UCGUGCuGCG---UCGCGCCCAacu----UGCu -5'
7803 5' -56.3 NC_001973.1 + 69669 0.66 0.917359
Target:  5'- cAGCACGAgGUcgGGCGCGGucgcgUGcaGACGGu -3'
miRNA:   3'- -UCGUGCUgCG--UCGCGCCca---AC--UUGCU- -5'
7803 5' -56.3 NC_001973.1 + 5761 0.66 0.917359
Target:  5'- cGGCccACGGCGCuacGCGCGucgccgUGGACGAa -3'
miRNA:   3'- -UCG--UGCUGCGu--CGCGCcca---ACUUGCU- -5'
7803 5' -56.3 NC_001973.1 + 145031 0.66 0.917359
Target:  5'- gAGUGCGGCGCgAGCGCGuc--GAGCGc -3'
miRNA:   3'- -UCGUGCUGCG-UCGCGCccaaCUUGCu -5'
7803 5' -56.3 NC_001973.1 + 40109 0.66 0.91155
Target:  5'- aGGUugGGauaGUAGCGgGGGU--GGCGAc -3'
miRNA:   3'- -UCGugCUg--CGUCGCgCCCAacUUGCU- -5'
7803 5' -56.3 NC_001973.1 + 63276 0.66 0.905508
Target:  5'- cGUuCGGCGCGGU-CGGGcgGGACGGu -3'
miRNA:   3'- uCGuGCUGCGUCGcGCCCaaCUUGCU- -5'
7803 5' -56.3 NC_001973.1 + 63809 0.66 0.905508
Target:  5'- cAGCAacCGACGCGGCcUGGGc--AACGAg -3'
miRNA:   3'- -UCGU--GCUGCGUCGcGCCCaacUUGCU- -5'
7803 5' -56.3 NC_001973.1 + 54247 0.66 0.899234
Target:  5'- gAGCugGAUGUAGCGCaacgcgugGcGGUUGA-CGu -3'
miRNA:   3'- -UCGugCUGCGUCGCG--------C-CCAACUuGCu -5'
7803 5' -56.3 NC_001973.1 + 55336 0.66 0.899234
Target:  5'- gGGUGCGcCGuCAGCGCGGaGcucaUGAGCGu -3'
miRNA:   3'- -UCGUGCuGC-GUCGCGCC-Ca---ACUUGCu -5'
7803 5' -56.3 NC_001973.1 + 146020 0.66 0.899234
Target:  5'- cGC-CGGCuCgAGCGCGGGUcgacGGACGGg -3'
miRNA:   3'- uCGuGCUGcG-UCGCGCCCAa---CUUGCU- -5'
7803 5' -56.3 NC_001973.1 + 106419 0.66 0.899234
Target:  5'- cGGCGCGACGCcgAGCGCGGcgcauACc- -3'
miRNA:   3'- -UCGUGCUGCG--UCGCGCCcaacuUGcu -5'
7803 5' -56.3 NC_001973.1 + 132617 0.66 0.899234
Target:  5'- cGCugGAgGCgAGCGCGGaGccGAGCa- -3'
miRNA:   3'- uCGugCUgCG-UCGCGCC-CaaCUUGcu -5'
7803 5' -56.3 NC_001973.1 + 67756 0.66 0.892732
Target:  5'- uGCAgGAUGCGcaacgacuugauGCGCGGGcugUUGAACu- -3'
miRNA:   3'- uCGUgCUGCGU------------CGCGCCC---AACUUGcu -5'
7803 5' -56.3 NC_001973.1 + 5977 0.66 0.892732
Target:  5'- uGCACuugcACGCGGCGCGGucgcGUUucgaccGGACGAg -3'
miRNA:   3'- uCGUGc---UGCGUCGCGCC----CAA------CUUGCU- -5'
7803 5' -56.3 NC_001973.1 + 6416 0.66 0.886005
Target:  5'- uGCGCGGCgGCGGCGCGccgacGAGCGc -3'
miRNA:   3'- uCGUGCUG-CGUCGCGCccaa-CUUGCu -5'
7803 5' -56.3 NC_001973.1 + 104149 0.66 0.886005
Target:  5'- gAGCACGAgGCGGUGgauCGGGccGGcCGAa -3'
miRNA:   3'- -UCGUGCUgCGUCGC---GCCCaaCUuGCU- -5'
7803 5' -56.3 NC_001973.1 + 136573 0.66 0.886005
Target:  5'- cAGCAUGGCGCuGCGCGccg-GcGCGAc -3'
miRNA:   3'- -UCGUGCUGCGuCGCGCccaaCuUGCU- -5'
7803 5' -56.3 NC_001973.1 + 73761 0.67 0.879057
Target:  5'- cGCGuacaccacCGACGCGGCG-GGGaacucGAGCGAg -3'
miRNA:   3'- uCGU--------GCUGCGUCGCgCCCaa---CUUGCU- -5'
7803 5' -56.3 NC_001973.1 + 44444 0.67 0.879057
Target:  5'- gGGCGCucgGGCGCgGGCGCucGGGgaucGAACGGg -3'
miRNA:   3'- -UCGUG---CUGCG-UCGCG--CCCaa--CUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.