miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7806 3' -53.9 NC_001973.1 + 6421 0.66 0.965754
Target:  5'- gGCGGCGGCGCGCCg---ACGagcGCGc -3'
miRNA:   3'- -CGCCGCUGUGUGGagcaUGUcaaCGC- -5'
7806 3' -53.9 NC_001973.1 + 7101 0.72 0.7682
Target:  5'- cGCGcGCGAC-CGCCgUCGUGCucgagUGCGg -3'
miRNA:   3'- -CGC-CGCUGuGUGG-AGCAUGuca--ACGC- -5'
7806 3' -53.9 NC_001973.1 + 7844 0.68 0.932768
Target:  5'- gGCGGCGcCGCGCC-CGUcgaGCuGgcGCGc -3'
miRNA:   3'- -CGCCGCuGUGUGGaGCA---UGuCaaCGC- -5'
7806 3' -53.9 NC_001973.1 + 7948 0.67 0.955106
Target:  5'- cGUGGUGcACGCGCCcgCGUGCGcGUacgcGCGa -3'
miRNA:   3'- -CGCCGC-UGUGUGGa-GCAUGU-CAa---CGC- -5'
7806 3' -53.9 NC_001973.1 + 8100 0.66 0.965754
Target:  5'- aCGGCGAgCACcgGCCggcUCGUGCAGaucgGCa -3'
miRNA:   3'- cGCCGCU-GUG--UGG---AGCAUGUCaa--CGc -5'
7806 3' -53.9 NC_001973.1 + 10470 0.68 0.910608
Target:  5'- aGCaGCcACACGCC-CGUGCuggGGUUGCa -3'
miRNA:   3'- -CGcCGcUGUGUGGaGCAUG---UCAACGc -5'
7806 3' -53.9 NC_001973.1 + 10665 0.69 0.898099
Target:  5'- gGCGucGCGugGCA-CUCGUGCGcGUUGCc -3'
miRNA:   3'- -CGC--CGCugUGUgGAGCAUGU-CAACGc -5'
7806 3' -53.9 NC_001973.1 + 16773 0.7 0.862837
Target:  5'- uGCGGCGAagcacgcgaaaCACGuCCUCGUACGuggcuUUGCa -3'
miRNA:   3'- -CGCCGCU-----------GUGU-GGAGCAUGUc----AACGc -5'
7806 3' -53.9 NC_001973.1 + 17265 0.68 0.932768
Target:  5'- cGCGGCGGcCGCGCaCUCGgGCAuc-GCGu -3'
miRNA:   3'- -CGCCGCU-GUGUG-GAGCaUGUcaaCGC- -5'
7806 3' -53.9 NC_001973.1 + 17456 0.68 0.922167
Target:  5'- aCGGCGGCAUGCaCUCGaGCAugccgUGCGc -3'
miRNA:   3'- cGCCGCUGUGUG-GAGCaUGUca---ACGC- -5'
7806 3' -53.9 NC_001973.1 + 28229 1.12 0.003537
Target:  5'- aGCGGCGACACACCUCGUACAGUUGCGa -3'
miRNA:   3'- -CGCCGCUGUGUGGAGCAUGUCAACGC- -5'
7806 3' -53.9 NC_001973.1 + 30375 0.66 0.974487
Target:  5'- cGCGGCGACucgggugcGgGCCggcgCGgcgGCGGcgGCGg -3'
miRNA:   3'- -CGCCGCUG--------UgUGGa---GCa--UGUCaaCGC- -5'
7806 3' -53.9 NC_001973.1 + 31872 0.67 0.955106
Target:  5'- gGCGGUGGCGCGCa-CGU-CGGU-GUGg -3'
miRNA:   3'- -CGCCGCUGUGUGgaGCAuGUCAaCGC- -5'
7806 3' -53.9 NC_001973.1 + 34736 0.69 0.904471
Target:  5'- aGCGGCGACAUuucgacgaauGCUUU---CGGUUGCGa -3'
miRNA:   3'- -CGCCGCUGUG----------UGGAGcauGUCAACGC- -5'
7806 3' -53.9 NC_001973.1 + 39402 0.67 0.946876
Target:  5'- aCGGCG-CGCGCCaggUCGgccGCGGUgagGCGc -3'
miRNA:   3'- cGCCGCuGUGUGG---AGCa--UGUCAa--CGC- -5'
7806 3' -53.9 NC_001973.1 + 40128 0.66 0.968568
Target:  5'- gGUGGCGACucgucGCGCCcaUCGUcucaaaguucucgGCGGUcGCGu -3'
miRNA:   3'- -CGCCGCUG-----UGUGG--AGCA-------------UGUCAaCGC- -5'
7806 3' -53.9 NC_001973.1 + 45338 0.69 0.884662
Target:  5'- cGCGGUugcaauuccggGGCACGCUgcucgUCGUGCAGUaGCc -3'
miRNA:   3'- -CGCCG-----------CUGUGUGG-----AGCAUGUCAaCGc -5'
7806 3' -53.9 NC_001973.1 + 48542 0.68 0.922167
Target:  5'- cGCGGCGACugGCCgcucugaauUGCGGccGCGc -3'
miRNA:   3'- -CGCCGCUGugUGGagc------AUGUCaaCGC- -5'
7806 3' -53.9 NC_001973.1 + 49686 0.7 0.862837
Target:  5'- cGCGGCGAUGgACCUgucgagccgcgcCGUGCAGUauccgGCc -3'
miRNA:   3'- -CGCCGCUGUgUGGA------------GCAUGUCAa----CGc -5'
7806 3' -53.9 NC_001973.1 + 50107 0.68 0.910608
Target:  5'- gGCGGCGGCGcCGCCgCGUAaaAGUUGa- -3'
miRNA:   3'- -CGCCGCUGU-GUGGaGCAUg-UCAACgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.