miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7806 3' -53.9 NC_001973.1 + 83087 0.67 0.946876
Target:  5'- aGCGGCGGCgGCGCCgUCGcGCucaUGCa -3'
miRNA:   3'- -CGCCGCUG-UGUGG-AGCaUGucaACGc -5'
7806 3' -53.9 NC_001973.1 + 39402 0.67 0.946876
Target:  5'- aCGGCG-CGCGCCaggUCGgccGCGGUgagGCGc -3'
miRNA:   3'- cGCCGCuGUGUGG---AGCa--UGUCAa--CGC- -5'
7806 3' -53.9 NC_001973.1 + 17265 0.68 0.932768
Target:  5'- cGCGGCGGcCGCGCaCUCGgGCAuc-GCGu -3'
miRNA:   3'- -CGCCGCU-GUGUG-GAGCaUGUcaaCGC- -5'
7806 3' -53.9 NC_001973.1 + 7844 0.68 0.932768
Target:  5'- gGCGGCGcCGCGCC-CGUcgaGCuGgcGCGc -3'
miRNA:   3'- -CGCCGCuGUGUGGaGCA---UGuCaaCGC- -5'
7806 3' -53.9 NC_001973.1 + 17456 0.68 0.922167
Target:  5'- aCGGCGGCAUGCaCUCGaGCAugccgUGCGc -3'
miRNA:   3'- cGCCGCUGUGUG-GAGCaUGUca---ACGC- -5'
7806 3' -53.9 NC_001973.1 + 48542 0.68 0.922167
Target:  5'- cGCGGCGACugGCCgcucugaauUGCGGccGCGc -3'
miRNA:   3'- -CGCCGCUGugUGGagc------AUGUCaaCGC- -5'
7806 3' -53.9 NC_001973.1 + 121590 0.68 0.922167
Target:  5'- cGCGGCGAC-CGCgUCGauCAGcgUGUGa -3'
miRNA:   3'- -CGCCGCUGuGUGgAGCauGUCa-ACGC- -5'
7806 3' -53.9 NC_001973.1 + 86745 0.68 0.914762
Target:  5'- aCGGCGGCGCgcgGCCUCGUuccgcgccuucaagGcCGGcUGCGg -3'
miRNA:   3'- cGCCGCUGUG---UGGAGCA--------------U-GUCaACGC- -5'
7806 3' -53.9 NC_001973.1 + 102642 0.68 0.910608
Target:  5'- gGCGcGCGACuggcaaACGCgCUCGUGcCAGgUGCGc -3'
miRNA:   3'- -CGC-CGCUG------UGUG-GAGCAU-GUCaACGC- -5'
7806 3' -53.9 NC_001973.1 + 50107 0.68 0.910608
Target:  5'- gGCGGCGGCGcCGCCgCGUAaaAGUUGa- -3'
miRNA:   3'- -CGCCGCUGU-GUGGaGCAUg-UCAACgc -5'
7806 3' -53.9 NC_001973.1 + 10470 0.68 0.910608
Target:  5'- aGCaGCcACACGCC-CGUGCuggGGUUGCa -3'
miRNA:   3'- -CGcCGcUGUGUGGaGCAUG---UCAACGc -5'
7806 3' -53.9 NC_001973.1 + 34736 0.69 0.904471
Target:  5'- aGCGGCGACAUuucgacgaauGCUUU---CGGUUGCGa -3'
miRNA:   3'- -CGCCGCUGUG----------UGGAGcauGUCAACGC- -5'
7806 3' -53.9 NC_001973.1 + 101968 0.69 0.898099
Target:  5'- gGCGGCGACgaugcGCGCCagcguguccgUGUGCucGUUGCGc -3'
miRNA:   3'- -CGCCGCUG-----UGUGGa---------GCAUGu-CAACGC- -5'
7806 3' -53.9 NC_001973.1 + 10665 0.69 0.898099
Target:  5'- gGCGucGCGugGCA-CUCGUGCGcGUUGCc -3'
miRNA:   3'- -CGC--CGCugUGUgGAGCAUGU-CAACGc -5'
7806 3' -53.9 NC_001973.1 + 53862 0.69 0.891495
Target:  5'- gGCGGCGGCGcCGCCgagCGcgGCGGccGUGg -3'
miRNA:   3'- -CGCCGCUGU-GUGGa--GCa-UGUCaaCGC- -5'
7806 3' -53.9 NC_001973.1 + 94676 0.69 0.884662
Target:  5'- -gGGCGACACgGCCUaCGUGCucuucgGCGa -3'
miRNA:   3'- cgCCGCUGUG-UGGA-GCAUGucaa--CGC- -5'
7806 3' -53.9 NC_001973.1 + 45338 0.69 0.884662
Target:  5'- cGCGGUugcaauuccggGGCACGCUgcucgUCGUGCAGUaGCc -3'
miRNA:   3'- -CGCCG-----------CUGUGUGG-----AGCAUGUCAaCGc -5'
7806 3' -53.9 NC_001973.1 + 88567 0.69 0.882569
Target:  5'- cGCGcGCccuccgcacgcacuGGCGCGCCUCGU-CGGUgGCGu -3'
miRNA:   3'- -CGC-CG--------------CUGUGUGGAGCAuGUCAaCGC- -5'
7806 3' -53.9 NC_001973.1 + 49686 0.7 0.862837
Target:  5'- cGCGGCGAUGgACCUgucgagccgcgcCGUGCAGUauccgGCc -3'
miRNA:   3'- -CGCCGCUGUgUGGA------------GCAUGUCAa----CGc -5'
7806 3' -53.9 NC_001973.1 + 16773 0.7 0.862837
Target:  5'- uGCGGCGAagcacgcgaaaCACGuCCUCGUACGuggcuUUGCa -3'
miRNA:   3'- -CGCCGCU-----------GUGU-GGAGCAUGUc----AACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.