miRNA display CGI


Results 21 - 40 of 235 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7806 5' -58.2 NC_001973.1 + 23673 0.66 0.839622
Target:  5'- -uCGguGCUCGCGGgccUCcgCGCgucgaCGCGCCa -3'
miRNA:   3'- acGCguUGAGCGCU---AGa-GCG-----GCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 138542 0.66 0.837219
Target:  5'- uUGUGCA-CUUGCacGcgCUCGCCGUcguauuugacuucgGCCa -3'
miRNA:   3'- -ACGCGUuGAGCG--CuaGAGCGGCG--------------CGG- -5'
7806 5' -58.2 NC_001973.1 + 5056 0.66 0.836414
Target:  5'- aGCGCAGCgucaagcgggggaCGCGcgCggCGuuGCGCa -3'
miRNA:   3'- aCGCGUUGa------------GCGCuaGa-GCggCGCGg -5'
7806 5' -58.2 NC_001973.1 + 111935 0.66 0.834799
Target:  5'- gUGCGCGGCg-GCGAcuUCUCcgacccggcggccgaGCgCGUGCCc -3'
miRNA:   3'- -ACGCGUUGagCGCU--AGAG---------------CG-GCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 43729 0.66 0.834799
Target:  5'- aGCGCuGCUCgaugGCGAccgcgucggugacgaUCUcccugacgcgCGCCGCGCUc -3'
miRNA:   3'- aCGCGuUGAG----CGCU---------------AGA----------GCGGCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 4152 0.66 0.831549
Target:  5'- gGCGauuaaguACUCGgugGGUCcgUCGCCGCGCa -3'
miRNA:   3'- aCGCgu-----UGAGCg--CUAG--AGCGGCGCGg -5'
7806 5' -58.2 NC_001973.1 + 41402 0.66 0.831549
Target:  5'- gGCGUcuAugUCGCGcgC-CGCCuccGCGUCg -3'
miRNA:   3'- aCGCG--UugAGCGCuaGaGCGG---CGCGG- -5'
7806 5' -58.2 NC_001973.1 + 42768 0.66 0.831549
Target:  5'- aGCGCGGuCUCuCGuUCagcaagCGCgCGCGCCa -3'
miRNA:   3'- aCGCGUU-GAGcGCuAGa-----GCG-GCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 96893 0.66 0.831549
Target:  5'- gUGCGCGGCgggCGCGucggaucguUCUCGgCCGUucgGCg -3'
miRNA:   3'- -ACGCGUUGa--GCGCu--------AGAGC-GGCG---CGg -5'
7806 5' -58.2 NC_001973.1 + 30556 0.66 0.830732
Target:  5'- aUGUGCAcGCUCGCGGccaUCGCCcuucuuuuuaaucGUGUCg -3'
miRNA:   3'- -ACGCGU-UGAGCGCUag-AGCGG-------------CGCGG- -5'
7806 5' -58.2 NC_001973.1 + 80769 0.66 0.82827
Target:  5'- cGCGCAGCcccuuguaacggaCGCGcAUUUCGCUgaGCGUCu -3'
miRNA:   3'- aCGCGUUGa------------GCGC-UAGAGCGG--CGCGG- -5'
7806 5' -58.2 NC_001973.1 + 56346 0.66 0.826621
Target:  5'- -uCGCGGC-CGCGcUCgggccccgacucggCGCCGCGCUc -3'
miRNA:   3'- acGCGUUGaGCGCuAGa-------------GCGGCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 71731 0.66 0.823302
Target:  5'- cGCGCccccGGCgccCGCGGcCgccccgGCCGCGCCg -3'
miRNA:   3'- aCGCG----UUGa--GCGCUaGag----CGGCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 15439 0.66 0.823302
Target:  5'- cGUGCGugUaGcCGAUCUUGUaCGCGUCg -3'
miRNA:   3'- aCGCGUugAgC-GCUAGAGCG-GCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 69368 0.66 0.823302
Target:  5'- cGUGCAcgcACUUGUcccucaacacGGUCUCGUagacgGCGCCg -3'
miRNA:   3'- aCGCGU---UGAGCG----------CUAGAGCGg----CGCGG- -5'
7806 5' -58.2 NC_001973.1 + 61333 0.66 0.822468
Target:  5'- cGCGCAGCUgcuucuccgccacCGCGua---GUCGUGCCg -3'
miRNA:   3'- aCGCGUUGA-------------GCGCuagagCGGCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 93666 0.67 0.814889
Target:  5'- aGCGCAagAUUCGCaug--UGCCGCaGCCa -3'
miRNA:   3'- aCGCGU--UGAGCGcuagaGCGGCG-CGG- -5'
7806 5' -58.2 NC_001973.1 + 95086 0.67 0.814889
Target:  5'- gGCGCugcagcGCUCGUGcgCggGCCGCGaCg -3'
miRNA:   3'- aCGCGu-----UGAGCGCuaGagCGGCGCgG- -5'
7806 5' -58.2 NC_001973.1 + 106957 0.67 0.814889
Target:  5'- aGCGCGcCggGCGcgCUCGgCGUGCg -3'
miRNA:   3'- aCGCGUuGagCGCuaGAGCgGCGCGg -5'
7806 5' -58.2 NC_001973.1 + 88765 0.67 0.814889
Target:  5'- cGCGCAggcACUCGUGcccgCUCaCCGUGUUg -3'
miRNA:   3'- aCGCGU---UGAGCGCua--GAGcGGCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.