miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7807 5' -58.1 NC_001973.1 + 123285 0.66 0.864
Target:  5'- gGC-CGGGCaGGCgcggccagcgcACCGCGUaGCcgCCGCGa -3'
miRNA:   3'- -CGaGCUCG-CCG-----------UGGCGUA-UGa-GGCGC- -5'
7807 5' -58.1 NC_001973.1 + 22783 0.66 0.859539
Target:  5'- uGgUCGGGCGGCAguucagcgcgaacgaUUGCcgGUGCgCCGCGg -3'
miRNA:   3'- -CgAGCUCGCCGU---------------GGCG--UAUGaGGCGC- -5'
7807 5' -58.1 NC_001973.1 + 68031 0.66 0.856525
Target:  5'- cGCgUCGcGCGGCACCacCAccacgauucUGCUCUGCa -3'
miRNA:   3'- -CG-AGCuCGCCGUGGc-GU---------AUGAGGCGc -5'
7807 5' -58.1 NC_001973.1 + 126552 0.66 0.856525
Target:  5'- gGCcagCGuGUGGCgcaGCCGCGgg-UCCGCGg -3'
miRNA:   3'- -CGa--GCuCGCCG---UGGCGUaugAGGCGC- -5'
7807 5' -58.1 NC_001973.1 + 83087 0.66 0.848857
Target:  5'- aGCggCG-GCGGCGCCGuCGcGCUCaUGCa -3'
miRNA:   3'- -CGa-GCuCGCCGUGGC-GUaUGAG-GCGc -5'
7807 5' -58.1 NC_001973.1 + 45214 0.66 0.841001
Target:  5'- gGCgCGAuGCGG-GCCGCGUGCUgCCGg- -3'
miRNA:   3'- -CGaGCU-CGCCgUGGCGUAUGA-GGCgc -5'
7807 5' -58.1 NC_001973.1 + 41635 0.66 0.841001
Target:  5'- cGCUCGAucgccuuucGCGaGCACCGCc-AUUUCGCc -3'
miRNA:   3'- -CGAGCU---------CGC-CGUGGCGuaUGAGGCGc -5'
7807 5' -58.1 NC_001973.1 + 133881 0.66 0.841001
Target:  5'- aCUCGGGCGccuGCACCuCGUuCUCgGCGc -3'
miRNA:   3'- cGAGCUCGC---CGUGGcGUAuGAGgCGC- -5'
7807 5' -58.1 NC_001973.1 + 146420 0.66 0.841001
Target:  5'- uGCggCGAGUcgGGguCCGCGUACgggUCGCu -3'
miRNA:   3'- -CGa-GCUCG--CCguGGCGUAUGa--GGCGc -5'
7807 5' -58.1 NC_001973.1 + 4246 0.66 0.841001
Target:  5'- uGCgUGAGCGGCGCguaCGCGaACagCCGCu -3'
miRNA:   3'- -CGaGCUCGCCGUG---GCGUaUGa-GGCGc -5'
7807 5' -58.1 NC_001973.1 + 61169 0.66 0.841001
Target:  5'- -gUCGGGCGGuCGCCGac-GCUCCuCGc -3'
miRNA:   3'- cgAGCUCGCC-GUGGCguaUGAGGcGC- -5'
7807 5' -58.1 NC_001973.1 + 63750 0.66 0.841001
Target:  5'- -aUCGAGCGGCGCCaC-UACga-GCGg -3'
miRNA:   3'- cgAGCUCGCCGUGGcGuAUGaggCGC- -5'
7807 5' -58.1 NC_001973.1 + 18250 0.66 0.832964
Target:  5'- uGCUCGAGuCGGUcCCGUcgGCgcacacggCCGaCGa -3'
miRNA:   3'- -CGAGCUC-GCCGuGGCGuaUGa-------GGC-GC- -5'
7807 5' -58.1 NC_001973.1 + 20943 0.66 0.832964
Target:  5'- -gUCGAGcCGGCGCgGUAaacugaGCUCgGCGg -3'
miRNA:   3'- cgAGCUC-GCCGUGgCGUa-----UGAGgCGC- -5'
7807 5' -58.1 NC_001973.1 + 157886 0.66 0.832964
Target:  5'- gGCUCGugucggaggucGCGGcCGCCGC--GC-CCGCGa -3'
miRNA:   3'- -CGAGCu----------CGCC-GUGGCGuaUGaGGCGC- -5'
7807 5' -58.1 NC_001973.1 + 26246 0.66 0.832964
Target:  5'- cGCUCGAcacgaccguGCGGCACgaGCG---UCCGCu -3'
miRNA:   3'- -CGAGCU---------CGCCGUGg-CGUaugAGGCGc -5'
7807 5' -58.1 NC_001973.1 + 121673 0.66 0.832151
Target:  5'- cGCUC--GCGGCGCCcggauaccgguacGCGaGCUCgGCGg -3'
miRNA:   3'- -CGAGcuCGCCGUGG-------------CGUaUGAGgCGC- -5'
7807 5' -58.1 NC_001973.1 + 7451 0.66 0.828057
Target:  5'- aGCUCGGcgguGCGGCgcgacgaggacuuuuGCCGCAgagaaggcgACUCCGa- -3'
miRNA:   3'- -CGAGCU----CGCCG---------------UGGCGUa--------UGAGGCgc -5'
7807 5' -58.1 NC_001973.1 + 117622 0.66 0.824752
Target:  5'- gGUUCGAcguagacuGCGGCGCCGCcgACcagCagGCGg -3'
miRNA:   3'- -CGAGCU--------CGCCGUGGCGuaUGa--Gg-CGC- -5'
7807 5' -58.1 NC_001973.1 + 103930 0.66 0.824752
Target:  5'- cGCgUCGucGCGGCGCgggGCGUGCcgUCGCGg -3'
miRNA:   3'- -CG-AGCu-CGCCGUGg--CGUAUGa-GGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.