miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7814 3' -65.5 NC_001973.1 + 6499 0.66 0.510331
Target:  5'- gCUGuaCCgGCUgggCGGCGCgGGCG-UGCCg -3'
miRNA:   3'- -GGC--GGgCGGa--GCCGCGaCCGCgACGG- -5'
7814 3' -65.5 NC_001973.1 + 1233 0.66 0.510331
Target:  5'- gCCGCCCaaGgCUCcGCGCaaGGCGCcGUCg -3'
miRNA:   3'- -GGCGGG--CgGAGcCGCGa-CCGCGaCGG- -5'
7814 3' -65.5 NC_001973.1 + 44955 0.66 0.510331
Target:  5'- cUCGCCCGUCUCGaaGUUGG-GCcGCa -3'
miRNA:   3'- -GGCGGGCGGAGCcgCGACCgCGaCGg -5'
7814 3' -65.5 NC_001973.1 + 88554 0.66 0.510331
Target:  5'- aCGCCgGCgUCGGCGC--GCGCccuCCg -3'
miRNA:   3'- gGCGGgCGgAGCCGCGacCGCGac-GG- -5'
7814 3' -65.5 NC_001973.1 + 145025 0.66 0.510331
Target:  5'- gCGCCCGagugCGGCGC-GaGCGCgucgagcGCCg -3'
miRNA:   3'- gGCGGGCgga-GCCGCGaC-CGCGa------CGG- -5'
7814 3' -65.5 NC_001973.1 + 52269 0.66 0.509427
Target:  5'- uCCGCCUugcucuugucgGUCUUGGCGUUGaGCuccaagcaguugaGCUGCUc -3'
miRNA:   3'- -GGCGGG-----------CGGAGCCGCGAC-CG-------------CGACGG- -5'
7814 3' -65.5 NC_001973.1 + 7565 0.66 0.509427
Target:  5'- aCGCaCCGCCUCGccuCGCUgacgaccGGCGC-GCg -3'
miRNA:   3'- gGCG-GGCGGAGCc--GCGA-------CCGCGaCGg -5'
7814 3' -65.5 NC_001973.1 + 51825 0.66 0.504913
Target:  5'- gCGCCCGCgUgcgUGGUGCgucugugcgagcugGGCGCcGUCg -3'
miRNA:   3'- gGCGGGCGgA---GCCGCGa-------------CCGCGaCGG- -5'
7814 3' -65.5 NC_001973.1 + 69507 0.66 0.502213
Target:  5'- cUCGaCCGUCUUGGCGCUcuuguacuugacguaGCGCaGCCg -3'
miRNA:   3'- -GGCgGGCGGAGCCGCGAc--------------CGCGaCGG- -5'
7814 3' -65.5 NC_001973.1 + 31007 0.66 0.501315
Target:  5'- -gGCCCGCgUucaCGGCGUcGGCGCUcaugaucuGCUc -3'
miRNA:   3'- ggCGGGCGgA---GCCGCGaCCGCGA--------CGG- -5'
7814 3' -65.5 NC_001973.1 + 6207 0.66 0.501315
Target:  5'- aCCGgCgGCg-CGGUGCcGGCGCggcGCCc -3'
miRNA:   3'- -GGCgGgCGgaGCCGCGaCCGCGa--CGG- -5'
7814 3' -65.5 NC_001973.1 + 136856 0.66 0.501315
Target:  5'- -aGUCCaGCCgCGGauacaGCUGGCGgaGCUc -3'
miRNA:   3'- ggCGGG-CGGaGCCg----CGACCGCgaCGG- -5'
7814 3' -65.5 NC_001973.1 + 4227 0.66 0.500417
Target:  5'- gCGCCUGCC--GGCGCUcguuugcgugagcGGCGCguacgcgaacaGCCg -3'
miRNA:   3'- gGCGGGCGGagCCGCGA-------------CCGCGa----------CGG- -5'
7814 3' -65.5 NC_001973.1 + 33402 0.66 0.495938
Target:  5'- gCGUCCGCgcaauccaucgucagCUCGGUGUc-GCGCUGCa -3'
miRNA:   3'- gGCGGGCG---------------GAGCCGCGacCGCGACGg -5'
7814 3' -65.5 NC_001973.1 + 24277 0.66 0.495938
Target:  5'- uCCGCgcgggCGCCUCGGCGaaugggcgaccacGGCGCgcgucgacGCCg -3'
miRNA:   3'- -GGCGg----GCGGAGCCGCga-----------CCGCGa-------CGG- -5'
7814 3' -65.5 NC_001973.1 + 94524 0.66 0.49326
Target:  5'- gCCGcCCCGCC-CGGCGCgccggucaucgacugGGCGga-CCg -3'
miRNA:   3'- -GGC-GGGCGGaGCCGCGa--------------CCGCgacGG- -5'
7814 3' -65.5 NC_001973.1 + 99820 0.66 0.492368
Target:  5'- aCGCUCGCgUC-GCGCUGcCGCUcGUCg -3'
miRNA:   3'- gGCGGGCGgAGcCGCGACcGCGA-CGG- -5'
7814 3' -65.5 NC_001973.1 + 82305 0.66 0.492368
Target:  5'- uUGCgaUgGCaggUGGCGCUGGCGUgcgUGCCg -3'
miRNA:   3'- gGCG--GgCGga-GCCGCGACCGCG---ACGG- -5'
7814 3' -65.5 NC_001973.1 + 64882 0.66 0.492368
Target:  5'- gCGCCCGaa---GUGCUGGCGCgggGCUu -3'
miRNA:   3'- gGCGGGCggagcCGCGACCGCGa--CGG- -5'
7814 3' -65.5 NC_001973.1 + 5751 0.66 0.492368
Target:  5'- gCCGCCgaagcgGCCcaCGGCGCUacGCGCgucGCCg -3'
miRNA:   3'- -GGCGGg-----CGGa-GCCGCGAc-CGCGa--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.