miRNA display CGI


Results 21 - 40 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7814 5' -53.7 NC_001973.1 + 130548 0.67 0.953376
Target:  5'- gGCGGaCGCGUaagauuuuacGCGUCGgccgGGGUCGAu- -3'
miRNA:   3'- -CGCC-GCGCAgu--------CGCAGU----UCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 130783 0.67 0.953376
Target:  5'- gGCgGGCGCGUaggauuuuacGCGUCGgccgGGGUCGAu- -3'
miRNA:   3'- -CG-CCGCGCAgu--------CGCAGU----UCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 130881 0.67 0.953376
Target:  5'- gGCGGaCGCGUaggauuuuacGCGUCGgcuaGGGUCGAu- -3'
miRNA:   3'- -CGCC-GCGCAgu--------CGCAGU----UCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 160550 0.67 0.953376
Target:  5'- gGCGGaCGCGUaagauuuuacGCGUCGgcuaGGGUCGAu- -3'
miRNA:   3'- -CGCC-GCGCAgu--------CGCAGU----UCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 160806 0.67 0.950928
Target:  5'- gGCGGgcgcguaggauuuuaCGCGUCGGcCGgagucgaucaUCGAGGUCGAGc -3'
miRNA:   3'- -CGCC---------------GCGCAGUC-GC----------AGUUCCAGUUUc -5'
7814 5' -53.7 NC_001973.1 + 4371 0.67 0.949249
Target:  5'- cGCGGCG-GUCuGGCGcUCcgcgGAGGUCAu-- -3'
miRNA:   3'- -CGCCGCgCAG-UCGC-AG----UUCCAGUuuc -5'
7814 5' -53.7 NC_001973.1 + 129234 0.67 0.949249
Target:  5'- gGCGGaCGCGUaagaucuuacGCGUCGgcaaGGGUCAucGg -3'
miRNA:   3'- -CGCC-GCGCAgu--------CGCAGU----UCCAGUuuC- -5'
7814 5' -53.7 NC_001973.1 + 160629 0.67 0.944885
Target:  5'- gGCGGaCGCGUaagauuuuacGCGUCGgcuaGGGUCAAc- -3'
miRNA:   3'- -CGCC-GCGCAgu--------CGCAGU----UCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 12355 0.67 0.940283
Target:  5'- gGCGGaCGCGUaggauuuuacGCGUCGgcaaGGGUCAAu- -3'
miRNA:   3'- -CGCC-GCGCAgu--------CGCAGU----UCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 20970 0.67 0.940283
Target:  5'- gGCGGaCGCGUaggauuuuacGCGUCGgcuaGGGUCAAu- -3'
miRNA:   3'- -CGCC-GCGCAgu--------CGCAGU----UCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 21069 0.67 0.940283
Target:  5'- gGCgGGCGCGUaggaucuuacGCGUCGgccgGGGUCAAu- -3'
miRNA:   3'- -CG-CCGCGCAgu--------CGCAGU----UCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 42609 0.67 0.940283
Target:  5'- uGCGGCGCGagGGCGc---GGUCGc-- -3'
miRNA:   3'- -CGCCGCGCagUCGCaguuCCAGUuuc -5'
7814 5' -53.7 NC_001973.1 + 121243 0.67 0.940283
Target:  5'- cGCGGCGCGUC-GCagaaCAGGGUg---- -3'
miRNA:   3'- -CGCCGCGCAGuCGca--GUUCCAguuuc -5'
7814 5' -53.7 NC_001973.1 + 129155 0.67 0.940283
Target:  5'- gGCGGaCGCGUaggaucuuacGCGUCGgcaaGGGUCAAu- -3'
miRNA:   3'- -CGCC-GCGCAgu--------CGCAGU----UCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 83449 0.67 0.93544
Target:  5'- cCGGUGCGaCAGCGccgcgcucgUCGAGGagGAGGu -3'
miRNA:   3'- cGCCGCGCaGUCGC---------AGUUCCagUUUC- -5'
7814 5' -53.7 NC_001973.1 + 83941 0.67 0.934942
Target:  5'- aCGGCGCGcCGcucggaggcgggcGCGUCGAGG-CAGcAGg -3'
miRNA:   3'- cGCCGCGCaGU-------------CGCAGUUCCaGUU-UC- -5'
7814 5' -53.7 NC_001973.1 + 146420 0.68 0.930354
Target:  5'- uGCGGCGaGUCGGgGUCcgcguacGGGUCGc-- -3'
miRNA:   3'- -CGCCGCgCAGUCgCAGu------UCCAGUuuc -5'
7814 5' -53.7 NC_001973.1 + 62593 0.68 0.907584
Target:  5'- aGCGaCGCGUCGcucgagcgacGCGUCGuGGUCGAc- -3'
miRNA:   3'- -CGCcGCGCAGU----------CGCAGUuCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 7272 0.69 0.901288
Target:  5'- uCGGCGCG-CGGCG-CGcccgcuaccGGGUCAAGc -3'
miRNA:   3'- cGCCGCGCaGUCGCaGU---------UCCAGUUUc -5'
7814 5' -53.7 NC_001973.1 + 130960 0.69 0.897397
Target:  5'- gGCGGacgcguaagaucuuaCGCGUCGGCG--AGGGUCGAu- -3'
miRNA:   3'- -CGCC---------------GCGCAGUCGCagUUCCAGUUuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.