miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7817 3' -53.4 NC_001973.1 + 26169 0.66 0.969049
Target:  5'- uUCcGCCGGCGCGggcgcGUCgacgGCGCu -3'
miRNA:   3'- gAGcCGGCCGCGCauuu-UAGga--UGCG- -5'
7817 3' -53.4 NC_001973.1 + 16312 0.66 0.969049
Target:  5'- aUCGGaCCGGaCGCGUGcgcgcucGAUCCgaugacaucACGCc -3'
miRNA:   3'- gAGCC-GGCC-GCGCAUu------UUAGGa--------UGCG- -5'
7817 3' -53.4 NC_001973.1 + 23570 0.66 0.968443
Target:  5'- -cCGGCCGGCggacGCGccgcccgCgCUGCGCg -3'
miRNA:   3'- gaGCCGGCCG----CGCauuuua-G-GAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 103939 0.67 0.965932
Target:  5'- -gCGGCgCGGgGCGUGccGUCgCgGCGCc -3'
miRNA:   3'- gaGCCG-GCCgCGCAUuuUAG-GaUGCG- -5'
7817 3' -53.4 NC_001973.1 + 121703 0.67 0.965932
Target:  5'- gCUCGGCggCGGCGuCGUc--GUCCU-CGUc -3'
miRNA:   3'- -GAGCCG--GCCGC-GCAuuuUAGGAuGCG- -5'
7817 3' -53.4 NC_001973.1 + 9683 0.67 0.965932
Target:  5'- cCUCGGCgaacggCGGCGCGUAcg--CC-ACGg -3'
miRNA:   3'- -GAGCCG------GCCGCGCAUuuuaGGaUGCg -5'
7817 3' -53.4 NC_001973.1 + 45606 0.67 0.965932
Target:  5'- -cCGGCgGaGCGCGUcggcgaucAGGUCC-ACGCg -3'
miRNA:   3'- gaGCCGgC-CGCGCAu-------UUUAGGaUGCG- -5'
7817 3' -53.4 NC_001973.1 + 88494 0.67 0.965932
Target:  5'- -cCGGCgCGGCGCGgcuccauAUUgUugGCc -3'
miRNA:   3'- gaGCCG-GCCGCGCauuu---UAGgAugCG- -5'
7817 3' -53.4 NC_001973.1 + 95790 0.67 0.965932
Target:  5'- -gCGGCUGGaccgGCGUGAcgg-CUACGCg -3'
miRNA:   3'- gaGCCGGCCg---CGCAUUuuagGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 109448 0.67 0.965932
Target:  5'- --aGGCUGGcCGCGUucAGGUCgaGCGUg -3'
miRNA:   3'- gagCCGGCC-GCGCAu-UUUAGgaUGCG- -5'
7817 3' -53.4 NC_001973.1 + 2099 0.67 0.965609
Target:  5'- aUC-GCCGGCGCGUAcuugcccgugcacAGcaCCUGCGg -3'
miRNA:   3'- gAGcCGGCCGCGCAU-------------UUuaGGAUGCg -5'
7817 3' -53.4 NC_001973.1 + 84398 0.67 0.965609
Target:  5'- cCUCGGaCGGCGUGcaguucgacaucuUGAAGcugaacaaCCUGCGCg -3'
miRNA:   3'- -GAGCCgGCCGCGC-------------AUUUUa-------GGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 81785 0.67 0.9626
Target:  5'- gCUCGGCgcgaaagugcaCGGcCGCGgu--GUCCgGCGCc -3'
miRNA:   3'- -GAGCCG-----------GCC-GCGCauuuUAGGaUGCG- -5'
7817 3' -53.4 NC_001973.1 + 9643 0.67 0.9626
Target:  5'- uUCGGCUcgagGGCGCGguacagCCgguCGCa -3'
miRNA:   3'- gAGCCGG----CCGCGCauuuuaGGau-GCG- -5'
7817 3' -53.4 NC_001973.1 + 773 0.67 0.9626
Target:  5'- -gCGGCCGuaguugccuCGCGUGAAAUCCgccgaacgGCGg -3'
miRNA:   3'- gaGCCGGCc--------GCGCAUUUUAGGa-------UGCg -5'
7817 3' -53.4 NC_001973.1 + 29977 0.67 0.962255
Target:  5'- gCUCGGUggugGGCGCGUAuaucugcGAGcCCgacgACGCg -3'
miRNA:   3'- -GAGCCGg---CCGCGCAU-------UUUaGGa---UGCG- -5'
7817 3' -53.4 NC_001973.1 + 68380 0.67 0.959413
Target:  5'- -cCGGCCGGCaaGUcgcccagguacagguAGAUCgUGCGCu -3'
miRNA:   3'- gaGCCGGCCGcgCAu--------------UUUAGgAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 151382 0.67 0.959048
Target:  5'- gUCGGCCGGgGuCGUcuGAGGUUagaauaACGCg -3'
miRNA:   3'- gAGCCGGCCgC-GCA--UUUUAGga----UGCG- -5'
7817 3' -53.4 NC_001973.1 + 123118 0.67 0.959048
Target:  5'- gUCGGCgCGcGCGauccgGUAGAA-CUUGCGCg -3'
miRNA:   3'- gAGCCG-GC-CGCg----CAUUUUaGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 72500 0.67 0.959048
Target:  5'- gUCGGCCGGguCGCGgcAAugauGUCaUAUGCc -3'
miRNA:   3'- gAGCCGGCC--GCGCauUU----UAGgAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.