miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7818 3' -56.9 NC_001973.1 + 97255 0.67 0.867577
Target:  5'- aCGUgcgaUGGCAGCGAagagacGUCGCCGg-CGAGg -3'
miRNA:   3'- aGCA----GCCGUUGCU------CGGCGGCaaGCUC- -5'
7818 3' -56.9 NC_001973.1 + 146067 0.67 0.867577
Target:  5'- cCG-CGGCGcCGAGCCGgCuCGggCGGGc -3'
miRNA:   3'- aGCaGCCGUuGCUCGGC-G-GCaaGCUC- -5'
7818 3' -56.9 NC_001973.1 + 140444 0.67 0.866846
Target:  5'- cUCGcCGGCGAgGAGCgcuucucCGCCGagUCGGa -3'
miRNA:   3'- -AGCaGCCGUUgCUCG-------GCGGCa-AGCUc -5'
7818 3' -56.9 NC_001973.1 + 103876 0.67 0.863165
Target:  5'- aUCGUgCGGCacGacaucgacgaggagaGCGAGCCGCCGcggcgcgaCGAGg -3'
miRNA:   3'- -AGCA-GCCG--U---------------UGCUCGGCGGCaa------GCUC- -5'
7818 3' -56.9 NC_001973.1 + 69551 0.67 0.860183
Target:  5'- -aGUCGagcGCGACGuAGCCGUCGcUCGGc -3'
miRNA:   3'- agCAGC---CGUUGC-UCGGCGGCaAGCUc -5'
7818 3' -56.9 NC_001973.1 + 53562 0.67 0.859433
Target:  5'- gUCGUCGGCcaugucuGCGAcugaggcGCgCGCCGgcgcCGAGg -3'
miRNA:   3'- -AGCAGCCGu------UGCU-------CG-GCGGCaa--GCUC- -5'
7818 3' -56.9 NC_001973.1 + 21541 0.67 0.858681
Target:  5'- aUC-UCGGCGuCGGGCgCGCCGUggucccggcgcgCGGGg -3'
miRNA:   3'- -AGcAGCCGUuGCUCG-GCGGCAa-----------GCUC- -5'
7818 3' -56.9 NC_001973.1 + 133296 0.67 0.852593
Target:  5'- gCGgcCGGCGGCGGcGCCGUCGcgCGGc -3'
miRNA:   3'- aGCa-GCCGUUGCU-CGGCGGCaaGCUc -5'
7818 3' -56.9 NC_001973.1 + 118691 0.67 0.852593
Target:  5'- gUCGUCGGCGACaauuGCCG-CGagCGAa -3'
miRNA:   3'- -AGCAGCCGUUGcu--CGGCgGCaaGCUc -5'
7818 3' -56.9 NC_001973.1 + 96924 0.67 0.852593
Target:  5'- cCGuUCGGCGACaAGUCcggcaucgacgaGCCGUUCGAc -3'
miRNA:   3'- aGC-AGCCGUUGcUCGG------------CGGCAAGCUc -5'
7818 3' -56.9 NC_001973.1 + 95334 0.67 0.847946
Target:  5'- -aGUCGGCGcGCGAGUUucugcagacguggaaGCUGUUCGAc -3'
miRNA:   3'- agCAGCCGU-UGCUCGG---------------CGGCAAGCUc -5'
7818 3' -56.9 NC_001973.1 + 157953 0.67 0.84481
Target:  5'- --cUCGGCGGuCGAGUCGCCcggcgugcucacGUUCGAu -3'
miRNA:   3'- agcAGCCGUU-GCUCGGCGG------------CAAGCUc -5'
7818 3' -56.9 NC_001973.1 + 117996 0.68 0.836843
Target:  5'- aUCGa-GGaGACGGGCUGCgUGUUCGAGa -3'
miRNA:   3'- -AGCagCCgUUGCUCGGCG-GCAAGCUC- -5'
7818 3' -56.9 NC_001973.1 + 124307 0.68 0.836843
Target:  5'- aCGUCGGCGgcacgcgcucgaGCGAGCUGCaCGc-CGAc -3'
miRNA:   3'- aGCAGCCGU------------UGCUCGGCG-GCaaGCUc -5'
7818 3' -56.9 NC_001973.1 + 90280 0.68 0.828697
Target:  5'- aUCGUCGGCu-CG-GCCGgUGUUCaAGg -3'
miRNA:   3'- -AGCAGCCGuuGCuCGGCgGCAAGcUC- -5'
7818 3' -56.9 NC_001973.1 + 56643 0.68 0.828697
Target:  5'- uUCGgcgCGGCcaaaGGCGGGCCGuCCGUgUUGAc -3'
miRNA:   3'- -AGCa--GCCG----UUGCUCGGC-GGCA-AGCUc -5'
7818 3' -56.9 NC_001973.1 + 8422 0.68 0.828697
Target:  5'- ---aCGGCAA-GAGCCGCCGcgUCGu- -3'
miRNA:   3'- agcaGCCGUUgCUCGGCGGCa-AGCuc -5'
7818 3' -56.9 NC_001973.1 + 39711 0.68 0.828697
Target:  5'- gCGUCGaGCAGCGcGGCCGCCa------ -3'
miRNA:   3'- aGCAGC-CGUUGC-UCGGCGGcaagcuc -5'
7818 3' -56.9 NC_001973.1 + 91552 0.68 0.820379
Target:  5'- uUCGUCGGCGGCGucGCaCGCUuGUcgCGAu -3'
miRNA:   3'- -AGCAGCCGUUGCu-CG-GCGG-CAa-GCUc -5'
7818 3' -56.9 NC_001973.1 + 35562 0.68 0.820379
Target:  5'- -aGcCGGCGaaGCGAGCCG-CGUUCGc- -3'
miRNA:   3'- agCaGCCGU--UGCUCGGCgGCAAGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.