miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7818 5' -55.6 NC_001973.1 + 136790 0.66 0.901733
Target:  5'- cGGUCuCGACGGGaaagaugUAGCGCGUcacgaaccUGCAGc- -3'
miRNA:   3'- -CCGG-GCUGCCC-------GUUGCGCA--------ACGUUua -5'
7818 5' -55.6 NC_001973.1 + 120406 0.67 0.896566
Target:  5'- cGCCCGACgucaggccccagcuGGGCGACGUGcuccagcugauggGCGAAa -3'
miRNA:   3'- cCGGGCUG--------------CCCGUUGCGCaa-----------CGUUUa -5'
7818 5' -55.6 NC_001973.1 + 56650 0.67 0.89591
Target:  5'- cGGCCaaaGGCGGGCcgucCGUGUUGaCGu-- -3'
miRNA:   3'- -CCGGg--CUGCCCGuu--GCGCAAC-GUuua -5'
7818 5' -55.6 NC_001973.1 + 74970 0.67 0.89591
Target:  5'- aGGCCagaaCGGgGGGCAGCGgGUgcucgGCGu-- -3'
miRNA:   3'- -CCGG----GCUgCCCGUUGCgCAa----CGUuua -5'
7818 5' -55.6 NC_001973.1 + 93033 0.67 0.89591
Target:  5'- uGCUCGAgcCGGGCGuuuACGCGUUGa---- -3'
miRNA:   3'- cCGGGCU--GCCCGU---UGCGCAACguuua -5'
7818 5' -55.6 NC_001973.1 + 107025 0.67 0.89591
Target:  5'- cGGUCUGuCGGGCAAgaagcuCGCGUUGg---- -3'
miRNA:   3'- -CCGGGCuGCCCGUU------GCGCAACguuua -5'
7818 5' -55.6 NC_001973.1 + 95418 0.67 0.89591
Target:  5'- -aCCCGcuGCuGGGCGACGCGgaGCGc-- -3'
miRNA:   3'- ccGGGC--UG-CCCGUUGCGCaaCGUuua -5'
7818 5' -55.6 NC_001973.1 + 82484 0.67 0.889219
Target:  5'- cGGCCCGAUGGa-GACGCGcgccUUGCc--- -3'
miRNA:   3'- -CCGGGCUGCCcgUUGCGC----AACGuuua -5'
7818 5' -55.6 NC_001973.1 + 124275 0.67 0.889219
Target:  5'- gGGCCCGuCGGcCGACGCucugaUGCAAu- -3'
miRNA:   3'- -CCGGGCuGCCcGUUGCGca---ACGUUua -5'
7818 5' -55.6 NC_001973.1 + 83031 0.67 0.889219
Target:  5'- -aUUCGGCGGGCGAgGCGgcGCGc-- -3'
miRNA:   3'- ccGGGCUGCCCGUUgCGCaaCGUuua -5'
7818 5' -55.6 NC_001973.1 + 67401 0.67 0.889219
Target:  5'- gGGCCCGGCGGuGUacacGACGaUGggGUAGGa -3'
miRNA:   3'- -CCGGGCUGCC-CG----UUGC-GCaaCGUUUa -5'
7818 5' -55.6 NC_001973.1 + 87455 0.67 0.8823
Target:  5'- gGGCCCGACGG----CGCGcaGCAGGUc -3'
miRNA:   3'- -CCGGGCUGCCcguuGCGCaaCGUUUA- -5'
7818 5' -55.6 NC_001973.1 + 100610 0.67 0.8823
Target:  5'- cGCUCGcgcucaaaaauACGGGCAGCGuCGUggGCAGc- -3'
miRNA:   3'- cCGGGC-----------UGCCCGUUGC-GCAa-CGUUua -5'
7818 5' -55.6 NC_001973.1 + 133297 0.67 0.8823
Target:  5'- cGGCCggCGGCGGcGCcguCGCGcgGCGAAa -3'
miRNA:   3'- -CCGG--GCUGCC-CGuu-GCGCaaCGUUUa -5'
7818 5' -55.6 NC_001973.1 + 87982 0.67 0.875157
Target:  5'- cGGCCCGuCGGu---CGCGUUGCc--- -3'
miRNA:   3'- -CCGGGCuGCCcguuGCGCAACGuuua -5'
7818 5' -55.6 NC_001973.1 + 76610 0.67 0.875157
Target:  5'- gGGCCUGGCGGuGCAGuaccaaGUGgcGCAGGc -3'
miRNA:   3'- -CCGGGCUGCC-CGUUg-----CGCaaCGUUUa -5'
7818 5' -55.6 NC_001973.1 + 23738 0.67 0.875157
Target:  5'- gGGCCCGAC-GGCGAcCGCGcccgGCc--- -3'
miRNA:   3'- -CCGGGCUGcCCGUU-GCGCaa--CGuuua -5'
7818 5' -55.6 NC_001973.1 + 35674 0.67 0.867796
Target:  5'- cGGCgcggCCGAC-GGCGGCGCGgugGCGGc- -3'
miRNA:   3'- -CCG----GGCUGcCCGUUGCGCaa-CGUUua -5'
7818 5' -55.6 NC_001973.1 + 106970 0.67 0.867796
Target:  5'- cGCUCGGCGuGC-GCGCGcUGCAGAg -3'
miRNA:   3'- cCGGGCUGCcCGuUGCGCaACGUUUa -5'
7818 5' -55.6 NC_001973.1 + 30391 0.67 0.867796
Target:  5'- cGGgCCGGCGcGGCGGCG-GcgGCGGAg -3'
miRNA:   3'- -CCgGGCUGC-CCGUUGCgCaaCGUUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.