miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
782 3' -47.2 NC_000852.3 + 157570 0.66 0.999981
Target:  5'- -aUGAAGCUgUCGAGaUCUCGAgGCa- -3'
miRNA:   3'- aaAUUUCGAgAGUUCgAGAGUU-CGag -5'
782 3' -47.2 NC_000852.3 + 321832 0.67 0.999965
Target:  5'- -aUGGAGCUCUauaacaAGGCUCUCGAa--- -3'
miRNA:   3'- aaAUUUCGAGAg-----UUCGAGAGUUcgag -5'
782 3' -47.2 NC_000852.3 + 69769 0.67 0.999952
Target:  5'- --gGAAGCUCUgAAGacuaUUUCAAcGCUCc -3'
miRNA:   3'- aaaUUUCGAGAgUUCg---AGAGUU-CGAG- -5'
782 3' -47.2 NC_000852.3 + 288827 0.68 0.999891
Target:  5'- --aGAAGCUCUagaagAAGCUCUUGAuCUCg -3'
miRNA:   3'- aaaUUUCGAGAg----UUCGAGAGUUcGAG- -5'
782 3' -47.2 NC_000852.3 + 37052 0.68 0.999817
Target:  5'- -----cGCUCUCuucGCUCUCuucaccguugcGAGCUCu -3'
miRNA:   3'- aaauuuCGAGAGuu-CGAGAG-----------UUCGAG- -5'
782 3' -47.2 NC_000852.3 + 107064 0.7 0.998905
Target:  5'- ---uGAGCUCgucgCGAGCaaguuccuUCUCGAGCUUc -3'
miRNA:   3'- aaauUUCGAGa---GUUCG--------AGAGUUCGAG- -5'
782 3' -47.2 NC_000852.3 + 285816 0.7 0.99839
Target:  5'- ---cAGGCUaUUCAGGCUaUUCAGGCUCc -3'
miRNA:   3'- aaauUUCGA-GAGUUCGA-GAGUUCGAG- -5'
782 3' -47.2 NC_000852.3 + 106352 0.73 0.984325
Target:  5'- gUUGAAcGCUUccuUCGAGCUCUUAauAGCUCu -3'
miRNA:   3'- aAAUUU-CGAG---AGUUCGAGAGU--UCGAG- -5'
782 3' -47.2 NC_000852.3 + 244671 0.79 0.873326
Target:  5'- --------nCUCAAGCUCUCAAGCUCu -3'
miRNA:   3'- aaauuucgaGAGUUCGAGAGUUCGAG- -5'
782 3' -47.2 NC_000852.3 + 244690 0.88 0.418039
Target:  5'- --cAAA-CUCUCAAGCUCUCAAGCUCu -3'
miRNA:   3'- aaaUUUcGAGAGUUCGAGAGUUCGAG- -5'
782 3' -47.2 NC_000852.3 + 244646 1.08 0.033482
Target:  5'- aUUUAAAGCUCUCAAGCUCUCAAGCUCu -3'
miRNA:   3'- -AAAUUUCGAGAGUUCGAGAGUUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.