miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
782 5' -48.2 NC_000852.3 + 168155 0.66 0.999982
Target:  5'- cCAGGUUCUCcacacGCUCUCAua-UCUCc -3'
miRNA:   3'- aGUUCGAGAGuu---UGAGAGUucgAGAG- -5'
782 5' -48.2 NC_000852.3 + 153492 0.66 0.999968
Target:  5'- uUCGAGCUCUUuggAAAUUUUgGcGUUCUCg -3'
miRNA:   3'- -AGUUCGAGAG---UUUGAGAgUuCGAGAG- -5'
782 5' -48.2 NC_000852.3 + 106346 0.67 0.999902
Target:  5'- ---cGCUUccuUCGAGCUCUUAauAGCUCUa -3'
miRNA:   3'- aguuCGAG---AGUUUGAGAGU--UCGAGAg -5'
782 5' -48.2 NC_000852.3 + 107066 0.68 0.999792
Target:  5'- cUUGAGCUCgucgCGAGCaaguuccuUCUCGAGCUuCUUg -3'
miRNA:   3'- -AGUUCGAGa---GUUUG--------AGAGUUCGA-GAG- -5'
782 5' -48.2 NC_000852.3 + 37077 0.7 0.998307
Target:  5'- gCGAGCUCUCGcACUCUgAAGUa--- -3'
miRNA:   3'- aGUUCGAGAGUuUGAGAgUUCGagag -5'
782 5' -48.2 NC_000852.3 + 284615 0.71 0.99606
Target:  5'- cUCGGGUcCUCGggUcCUCGGGUUCUCa -3'
miRNA:   3'- -AGUUCGaGAGUuuGaGAGUUCGAGAG- -5'
782 5' -48.2 NC_000852.3 + 200139 0.73 0.987857
Target:  5'- aCAAGUUCgUCAAACgUCUCGaaugAGCUCUg -3'
miRNA:   3'- aGUUCGAG-AGUUUG-AGAGU----UCGAGAg -5'
782 5' -48.2 NC_000852.3 + 285814 0.73 0.984507
Target:  5'- uUCAGGCUaUUCAGGCUaUUCAGGCUCc- -3'
miRNA:   3'- -AGUUCGA-GAGUUUGA-GAGUUCGAGag -5'
782 5' -48.2 NC_000852.3 + 37026 0.75 0.956579
Target:  5'- aCAauGGCUCUUAcuaaGACUCUCuucGCUCUCu -3'
miRNA:   3'- aGU--UCGAGAGU----UUGAGAGuu-CGAGAG- -5'
782 5' -48.2 NC_000852.3 + 244681 1.09 0.028483
Target:  5'- nCAAGCUCUCAAACUCUCAAGCUCUCa -3'
miRNA:   3'- aGUUCGAGAGUUUGAGAGUUCGAGAG- -5'
782 5' -48.2 NC_000852.3 + 244656 1.12 0.019227
Target:  5'- cUCAAGCUCUCAAGCUCUCAAGCUCUCa -3'
miRNA:   3'- -AGUUCGAGAGUUUGAGAGUUCGAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.