miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7821 3' -54.7 NC_001973.1 + 130867 1.08 0.004767
Target:  5'- cUAAACUCGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- -AUUUGAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 130691 1.08 0.004767
Target:  5'- cUAAACUCGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- -AUUUGAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 16354 1.08 0.004767
Target:  5'- cUAAACUCGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- -AUUUGAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 12107 1.07 0.005331
Target:  5'- cAAACUCGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 151061 1.07 0.005184
Target:  5'- cAGACUCGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 129298 1.07 0.005331
Target:  5'- cAAACUCGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 12342 1.07 0.005331
Target:  5'- cAAACUCGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 21056 1.07 0.005637
Target:  5'- cGAGCUCGAGCUCGGCGGGCGCGUAGg -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 160793 1.06 0.006304
Target:  5'- cAAGCUCGAGCUCGGCGGGCGCGUAGg -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 130770 1.06 0.006304
Target:  5'- cAAACUCGAGCUCGGCGGGCGCGUAGg -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 72117 1.04 0.008334
Target:  5'- -uAACUCGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- auUUGAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 160695 1.04 0.008334
Target:  5'- -uAACUCGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- auUUGAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 151346 1.03 0.009853
Target:  5'- cAGAUUCGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 127428 1.03 0.009582
Target:  5'- cUAAACUCGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- -AUUUGAGCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 150952 1.03 0.010418
Target:  5'- cAGACUCGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 21156 1.03 0.009582
Target:  5'- --cGCUCGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- auuUGAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 160381 1.02 0.010712
Target:  5'- cAAGCUCGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 160616 1.02 0.010712
Target:  5'- cAAACUCGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 129221 1.02 0.010712
Target:  5'- cAAACUCGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 130947 1.02 0.010712
Target:  5'- cAAACUCGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCUGCGCAUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.