miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7821 3' -54.7 NC_001973.1 + 12263 0.88 0.096369
Target:  5'- cUAAAC-CcAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- -AUUUGaGcUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 72360 0.88 0.091364
Target:  5'- -uAACUCGAGCUCGGCcGACGCGUAa -3'
miRNA:   3'- auUUGAGCUCGAGCCGcCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 127585 0.88 0.088955
Target:  5'- cAAGCUCGAGCUCGGCGGuCGCcUAGa -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCuGCGcAUC- -5'
7821 3' -54.7 NC_001973.1 + 96039 0.86 0.125502
Target:  5'- cGAGCUCGGGCUgGGCGGucuguuCGCGUGGg -3'
miRNA:   3'- aUUUGAGCUCGAgCCGCCu-----GCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 150899 0.77 0.428715
Target:  5'- -----aCGAGCUCGGCcGACGCGUAa -3'
miRNA:   3'- auuugaGCUCGAGCCGcCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 42866 0.77 0.428715
Target:  5'- -cAugUCGAGCgagCGGCGG-CGCGUGa -3'
miRNA:   3'- auUugAGCUCGa--GCCGCCuGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 52150 0.76 0.437732
Target:  5'- gAAACUCGGGCagcCGGUGGGCGcCGUAc -3'
miRNA:   3'- aUUUGAGCUCGa--GCCGCCUGC-GCAUc -5'
7821 3' -54.7 NC_001973.1 + 132554 0.76 0.474848
Target:  5'- cGGGCUCGAGCgCGGCGGugugGCGCGc-- -3'
miRNA:   3'- aUUUGAGCUCGaGCCGCC----UGCGCauc -5'
7821 3' -54.7 NC_001973.1 + 7437 0.74 0.54326
Target:  5'- aGGACUCgcacguGAGCUCGGCGGugcgGCGCGa-- -3'
miRNA:   3'- aUUUGAG------CUCGAGCCGCC----UGCGCauc -5'
7821 3' -54.7 NC_001973.1 + 52726 0.74 0.583798
Target:  5'- -cAGCUCGAGCgccaGGCGG-CGCGUc- -3'
miRNA:   3'- auUUGAGCUCGag--CCGCCuGCGCAuc -5'
7821 3' -54.7 NC_001973.1 + 151303 0.74 0.594038
Target:  5'- uUGAAUUauaaUGAGCg-GGCGGACGUGUAGg -3'
miRNA:   3'- -AUUUGA----GCUCGagCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 126041 0.74 0.583798
Target:  5'- uUGAAUUUGAGCUCuGCcGACGCGUAa -3'
miRNA:   3'- -AUUUGAGCUCGAGcCGcCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 89105 0.72 0.655805
Target:  5'- ----gUCGAGCUCcGCGGGCGCGc-- -3'
miRNA:   3'- auuugAGCUCGAGcCGCCUGCGCauc -5'
7821 3' -54.7 NC_001973.1 + 144723 0.72 0.696704
Target:  5'- aGGACaUCGAGCgccaggcggCGGCGGAgGCGgccgAGg -3'
miRNA:   3'- aUUUG-AGCUCGa--------GCCGCCUgCGCa---UC- -5'
7821 3' -54.7 NC_001973.1 + 56530 0.72 0.696704
Target:  5'- cAAGCUCGGGCggGGCGGGCuCGgcGc -3'
miRNA:   3'- aUUUGAGCUCGagCCGCCUGcGCauC- -5'
7821 3' -54.7 NC_001973.1 + 56503 0.72 0.696704
Target:  5'- cAAGCUCGGGCggGGCGGGCuCGgcGc -3'
miRNA:   3'- aUUUGAGCUCGagCCGCCUGcGCauC- -5'
7821 3' -54.7 NC_001973.1 + 56476 0.72 0.696704
Target:  5'- cAAGCUCGGGCggGGCGGGCuCGgcGc -3'
miRNA:   3'- aUUUGAGCUCGagCCGCCUGcGCauC- -5'
7821 3' -54.7 NC_001973.1 + 34061 0.72 0.686539
Target:  5'- gUGAGCUgcucggugaUGAGCgccaucUUGGCGGugGCGUAGc -3'
miRNA:   3'- -AUUUGA---------GCUCG------AGCCGCCugCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 55916 0.72 0.66608
Target:  5'- cGGGCUCGGGCUCGGgcuCGGGCucgaGUAGu -3'
miRNA:   3'- aUUUGAGCUCGAGCC---GCCUGcg--CAUC- -5'
7821 3' -54.7 NC_001973.1 + 31039 0.72 0.661973
Target:  5'- --uGCUCGAGCgucugaacgccgaCGGCGGGCaGCGUGc -3'
miRNA:   3'- auuUGAGCUCGa------------GCCGCCUG-CGCAUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.