miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7821 3' -54.7 NC_001973.1 + 72022 1 0.016263
Target:  5'- -cAACUCGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- auUUGAGCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 71935 1 0.016721
Target:  5'- -uAACUCGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- auUUGAGCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 72282 1 0.016721
Target:  5'- -uAACUCGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- auUUGAGCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 130613 0.99 0.019211
Target:  5'- cUAAAC-CGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- -AUUUGaGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 16435 0.99 0.019211
Target:  5'- --cGCUCGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- auuUGAGCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 16513 0.99 0.019211
Target:  5'- --cGCUCGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- auuUGAGCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 20957 0.96 0.028308
Target:  5'- gUAAACU-GAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- -AUUUGAgCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 160459 0.96 0.029101
Target:  5'- cUAAACU-GAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- -AUUUGAgCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 12185 0.96 0.029101
Target:  5'- cUAAACU-GAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- -AUUUGAgCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 127507 0.95 0.034336
Target:  5'- cUAAACU-GAGCUCGGCGGGCGCGUAGg -3'
miRNA:   3'- -AUUUGAgCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 129139 0.94 0.03833
Target:  5'- -cGACUugaaCGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- auUUGA----GCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 130535 0.94 0.03833
Target:  5'- cUAAAC-CGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- -AUUUGaGCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 12420 0.93 0.04644
Target:  5'- cAAACUUGAGCUCGGCuGACGCGUAGg -3'
miRNA:   3'- aUUUGAGCUCGAGCCGcCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 72202 0.92 0.049051
Target:  5'- cUGAAgUUGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- -AUUUgAGCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 2799 0.92 0.050409
Target:  5'- ----aUUGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- auuugAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 2677 0.92 0.053236
Target:  5'- cGAGCUCGAGCUCGGCcGACGCGUAa -3'
miRNA:   3'- aUUUGAGCUCGAGCCGcCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 127351 0.91 0.057767
Target:  5'- cUAAACU-GAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- -AUUUGAgCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 160537 0.91 0.057767
Target:  5'- cUAAACU-GAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- -AUUUGAgCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 72466 0.9 0.066161
Target:  5'- -uAAC-CGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- auUUGaGCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 128976 0.89 0.086607
Target:  5'- cAAACUCGAGCUCGGCcaACGCGUAGg -3'
miRNA:   3'- aUUUGAGCUCGAGCCGccUGCGCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.