miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7821 3' -54.7 NC_001973.1 + 2677 0.92 0.053236
Target:  5'- cGAGCUCGAGCUCGGCcGACGCGUAa -3'
miRNA:   3'- aUUUGAGCUCGAGCCGcCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 2799 0.92 0.050409
Target:  5'- ----aUUGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- auuugAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 2872 0.71 0.726833
Target:  5'- ---cUUUGAucacGCUCGGCGGACGCGc-- -3'
miRNA:   3'- auuuGAGCU----CGAGCCGCCUGCGCauc -5'
7821 3' -54.7 NC_001973.1 + 7260 0.68 0.868897
Target:  5'- --uGCgcagCGGGCUCGGCGcgcGGCGCGc-- -3'
miRNA:   3'- auuUGa---GCUCGAGCCGC---CUGCGCauc -5'
7821 3' -54.7 NC_001973.1 + 7437 0.74 0.54326
Target:  5'- aGGACUCgcacguGAGCUCGGCGGugcgGCGCGa-- -3'
miRNA:   3'- aUUUGAG------CUCGAGCCGCC----UGCGCauc -5'
7821 3' -54.7 NC_001973.1 + 9683 0.66 0.950599
Target:  5'- ---cCUCG-GCgaaCGGCGG-CGCGUAc -3'
miRNA:   3'- auuuGAGCuCGa--GCCGCCuGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 12107 1.07 0.005331
Target:  5'- cAAACUCGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 12185 0.96 0.029101
Target:  5'- cUAAACU-GAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- -AUUUGAgCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 12263 0.88 0.096369
Target:  5'- cUAAAC-CcAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- -AUUUGaGcUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 12342 1.07 0.005331
Target:  5'- cAAACUCGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 12420 0.93 0.04644
Target:  5'- cAAACUUGAGCUCGGCuGACGCGUAGg -3'
miRNA:   3'- aUUUGAGCUCGAGCCGcCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 16354 1.08 0.004767
Target:  5'- cUAAACUCGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- -AUUUGAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 16435 0.99 0.019211
Target:  5'- --cGCUCGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- auuUGAGCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 16513 0.99 0.019211
Target:  5'- --cGCUCGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- auuUGAGCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 20471 0.66 0.946317
Target:  5'- --uACUCGccCUCGGCGcACaGCGUGGg -3'
miRNA:   3'- auuUGAGCucGAGCCGCcUG-CGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 20957 0.96 0.028308
Target:  5'- gUAAACU-GAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- -AUUUGAgCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 21056 1.07 0.005637
Target:  5'- cGAGCUCGAGCUCGGCGGGCGCGUAGg -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 21156 1.03 0.009582
Target:  5'- --cGCUCGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- auuUGAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 23555 0.67 0.921316
Target:  5'- aAuuCUCGAccgcagccgGC-CGGCGGACGCGc-- -3'
miRNA:   3'- aUuuGAGCU---------CGaGCCGCCUGCGCauc -5'
7821 3' -54.7 NC_001973.1 + 23662 0.66 0.950599
Target:  5'- gGGACUCGAGaUCGGUGcuCGCGg-- -3'
miRNA:   3'- aUUUGAGCUCgAGCCGCcuGCGCauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.