miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7821 3' -54.7 NC_001973.1 + 29968 0.7 0.802842
Target:  5'- gAGACgCcGGCUCGGUgguGGGCGCGUAu -3'
miRNA:   3'- aUUUGaGcUCGAGCCG---CCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 30380 0.66 0.937041
Target:  5'- -cGACUCGGGUgcgGGCcGGCGCGgcGg -3'
miRNA:   3'- auUUGAGCUCGag-CCGcCUGCGCauC- -5'
7821 3' -54.7 NC_001973.1 + 31039 0.72 0.661973
Target:  5'- --uGCUCGAGCgucugaacgccgaCGGCGGGCaGCGUGc -3'
miRNA:   3'- auuUGAGCUCGa------------GCCGCCUG-CGCAUc -5'
7821 3' -54.7 NC_001973.1 + 34061 0.72 0.686539
Target:  5'- gUGAGCUgcucggugaUGAGCgccaucUUGGCGGugGCGUAGc -3'
miRNA:   3'- -AUUUGA---------GCUCG------AGCCGCCugCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 41113 0.69 0.832381
Target:  5'- cGAGCUCGAGUuuggucauuuaguugUCGGCGG-CgGCGgcGg -3'
miRNA:   3'- aUUUGAGCUCG---------------AGCCGCCuG-CGCauC- -5'
7821 3' -54.7 NC_001973.1 + 41783 0.69 0.82901
Target:  5'- --uGCcCGAGaaCGGCGGGCGCGagUGGg -3'
miRNA:   3'- auuUGaGCUCgaGCCGCCUGCGC--AUC- -5'
7821 3' -54.7 NC_001973.1 + 42866 0.77 0.428715
Target:  5'- -cAugUCGAGCgagCGGCGG-CGCGUGa -3'
miRNA:   3'- auUugAGCUCGa--GCCGCCuGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 52150 0.76 0.437732
Target:  5'- gAAACUCGGGCagcCGGUGGGCGcCGUAc -3'
miRNA:   3'- aUUUGAGCUCGa--GCCGCCUGC-GCAUc -5'
7821 3' -54.7 NC_001973.1 + 52726 0.74 0.583798
Target:  5'- -cAGCUCGAGCgccaGGCGG-CGCGUc- -3'
miRNA:   3'- auUUGAGCUCGag--CCGCCuGCGCAuc -5'
7821 3' -54.7 NC_001973.1 + 52809 0.68 0.868897
Target:  5'- cGAACUCGGGCUCGaGCGcGCuGuCGUAc -3'
miRNA:   3'- aUUUGAGCUCGAGC-CGCcUG-C-GCAUc -5'
7821 3' -54.7 NC_001973.1 + 53847 0.68 0.883386
Target:  5'- cGAGCUCGccccGGCggCGGCGGcgccgccgaGCGCGgcGg -3'
miRNA:   3'- aUUUGAGC----UCGa-GCCGCC---------UGCGCauC- -5'
7821 3' -54.7 NC_001973.1 + 55916 0.72 0.66608
Target:  5'- cGGGCUCGGGCUCGGgcuCGGGCucgaGUAGu -3'
miRNA:   3'- aUUUGAGCUCGAGCC---GCCUGcg--CAUC- -5'
7821 3' -54.7 NC_001973.1 + 56449 0.72 0.696704
Target:  5'- cAAGCUCGGGCggGGCGGGCuCGgcGc -3'
miRNA:   3'- aUUUGAGCUCGagCCGCCUGcGCauC- -5'
7821 3' -54.7 NC_001973.1 + 56476 0.72 0.696704
Target:  5'- cAAGCUCGGGCggGGCGGGCuCGgcGc -3'
miRNA:   3'- aUUUGAGCUCGagCCGCCUGcGCauC- -5'
7821 3' -54.7 NC_001973.1 + 56503 0.72 0.696704
Target:  5'- cAAGCUCGGGCggGGCGGGCuCGgcGc -3'
miRNA:   3'- aUUUGAGCUCGagCCGCCUGcGCauC- -5'
7821 3' -54.7 NC_001973.1 + 56530 0.72 0.696704
Target:  5'- cAAGCUCGGGCggGGCGGGCuCGgcGc -3'
miRNA:   3'- aUUUGAGCUCGagCCGCCUGcGCauC- -5'
7821 3' -54.7 NC_001973.1 + 56557 0.69 0.853545
Target:  5'- cGAGCUCGAuaUCGGgcucuaugaCGGGCGCGg-- -3'
miRNA:   3'- aUUUGAGCUcgAGCC---------GCCUGCGCauc -5'
7821 3' -54.7 NC_001973.1 + 58034 0.68 0.876252
Target:  5'- cGAuCUCGGGCUcCGGCGG-CgGCGgcGg -3'
miRNA:   3'- aUUuGAGCUCGA-GCCGCCuG-CGCauC- -5'
7821 3' -54.7 NC_001973.1 + 60440 0.66 0.946317
Target:  5'- -cAGCUCGAGC-CGcagcaguacGUGGACGCGc-- -3'
miRNA:   3'- auUUGAGCUCGaGC---------CGCCUGCGCauc -5'
7821 3' -54.7 NC_001973.1 + 61194 0.67 0.91559
Target:  5'- cUGAACgCGcGCUCgGGCGGGCGCc--- -3'
miRNA:   3'- -AUUUGaGCuCGAG-CCGCCUGCGcauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.