miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7821 3' -54.7 NC_001973.1 + 62576 0.71 0.716861
Target:  5'- aGGGCUCGAGCg-GGCGcagcGACGCGUc- -3'
miRNA:   3'- aUUUGAGCUCGagCCGC----CUGCGCAuc -5'
7821 3' -54.7 NC_001973.1 + 62933 0.66 0.941799
Target:  5'- -cGACUCGGGC-CGGCGu-CGUcaGUAGa -3'
miRNA:   3'- auUUGAGCUCGaGCCGCcuGCG--CAUC- -5'
7821 3' -54.7 NC_001973.1 + 67448 0.71 0.716861
Target:  5'- cGGGCacCGGGCUC-GCGGACGCGUc- -3'
miRNA:   3'- aUUUGa-GCUCGAGcCGCCUGCGCAuc -5'
7821 3' -54.7 NC_001973.1 + 71779 0.68 0.896972
Target:  5'- cGAGCUCGAgGC-CGGCGG-CGCc--- -3'
miRNA:   3'- aUUUGAGCU-CGaGCCGCCuGCGcauc -5'
7821 3' -54.7 NC_001973.1 + 71935 1 0.016721
Target:  5'- -uAACUCGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- auUUGAGCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 72022 1 0.016263
Target:  5'- -cAACUCGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- auUUGAGCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 72117 1.04 0.008334
Target:  5'- -uAACUCGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- auUUGAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 72202 0.92 0.049051
Target:  5'- cUGAAgUUGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- -AUUUgAGCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 72282 1 0.016721
Target:  5'- -uAACUCGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- auUUGAGCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 72360 0.88 0.091364
Target:  5'- -uAACUCGAGCUCGGCcGACGCGUAa -3'
miRNA:   3'- auUUGAGCUCGAGCCGcCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 72466 0.9 0.066161
Target:  5'- -uAAC-CGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- auUUGaGCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 74211 0.68 0.890294
Target:  5'- -----aCGAGCUCGGCgucGGAgGCGUu- -3'
miRNA:   3'- auuugaGCUCGAGCCG---CCUgCGCAuc -5'
7821 3' -54.7 NC_001973.1 + 77014 0.66 0.937041
Target:  5'- ----gUCGGGCggCGGCGGcGCGCGc-- -3'
miRNA:   3'- auuugAGCUCGa-GCCGCC-UGCGCauc -5'
7821 3' -54.7 NC_001973.1 + 83950 0.66 0.932042
Target:  5'- --cGCUCG-Ga--GGCGGGCGCGUcgAGg -3'
miRNA:   3'- auuUGAGCuCgagCCGCCUGCGCA--UC- -5'
7821 3' -54.7 NC_001973.1 + 89105 0.72 0.655805
Target:  5'- ----gUCGAGCUCcGCGGGCGCGc-- -3'
miRNA:   3'- auuugAGCUCGAGcCGCCUGCGCauc -5'
7821 3' -54.7 NC_001973.1 + 95969 0.66 0.941799
Target:  5'- -----aCGAGa-CGGCGGGCGCGcUGGu -3'
miRNA:   3'- auuugaGCUCgaGCCGCCUGCGC-AUC- -5'
7821 3' -54.7 NC_001973.1 + 96039 0.86 0.125502
Target:  5'- cGAGCUCGGGCUgGGCGGucuguuCGCGUGGg -3'
miRNA:   3'- aUUUGAGCUCGAgCCGCCu-----GCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 96886 0.68 0.896972
Target:  5'- cGGAUcUGuGCgCGGCGGGCGCGUcGGa -3'
miRNA:   3'- aUUUGaGCuCGaGCCGCCUGCGCA-UC- -5'
7821 3' -54.7 NC_001973.1 + 106677 0.67 0.915004
Target:  5'- --cGCUCGAcgaucucgacgucGCuUUGGCGGGCGCGc-- -3'
miRNA:   3'- auuUGAGCU-------------CG-AGCCGCCUGCGCauc -5'
7821 3' -54.7 NC_001973.1 + 117502 0.68 0.876252
Target:  5'- -uGGCUUuGGCcgcCGGCGG-CGCGUAGa -3'
miRNA:   3'- auUUGAGcUCGa--GCCGCCuGCGCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.