miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7821 3' -54.7 NC_001973.1 + 160793 1.06 0.006304
Target:  5'- cAAGCUCGAGCUCGGCGGGCGCGUAGg -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 160695 1.04 0.008334
Target:  5'- -uAACUCGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- auUUGAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 160616 1.02 0.010712
Target:  5'- cAAACUCGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 160537 0.91 0.057767
Target:  5'- cUAAACU-GAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- -AUUUGAgCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 160459 0.96 0.029101
Target:  5'- cUAAACU-GAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- -AUUUGAgCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 160381 1.02 0.010712
Target:  5'- cAAGCUCGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 159542 0.68 0.892993
Target:  5'- gAGAcCUCGAGCaggaucuccuccuccUCGGCGGAgGuCGUGc -3'
miRNA:   3'- aUUU-GAGCUCG---------------AGCCGCCUgC-GCAUc -5'
7821 3' -54.7 NC_001973.1 + 159050 0.69 0.853545
Target:  5'- ----gUCGAGCU-GGuCGGACGCGgAGg -3'
miRNA:   3'- auuugAGCUCGAgCC-GCCUGCGCaUC- -5'
7821 3' -54.7 NC_001973.1 + 151346 1.03 0.009853
Target:  5'- cAGAUUCGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 151303 0.74 0.594038
Target:  5'- uUGAAUUauaaUGAGCg-GGCGGACGUGUAGg -3'
miRNA:   3'- -AUUUGA----GCUCGagCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 151061 1.07 0.005184
Target:  5'- cAGACUCGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 150952 1.03 0.010418
Target:  5'- cAGACUCGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 150899 0.77 0.428715
Target:  5'- -----aCGAGCUCGGCcGACGCGUAa -3'
miRNA:   3'- auuugaGCUCGAGCCGcCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 146023 0.67 0.909622
Target:  5'- -cGGCUCGAGCgCGGgucgaCGGACGgGgcGa -3'
miRNA:   3'- auUUGAGCUCGaGCC-----GCCUGCgCauC- -5'
7821 3' -54.7 NC_001973.1 + 144723 0.72 0.696704
Target:  5'- aGGACaUCGAGCgccaggcggCGGCGGAgGCGgccgAGg -3'
miRNA:   3'- aUUUG-AGCUCGa--------GCCGCCUgCGCa---UC- -5'
7821 3' -54.7 NC_001973.1 + 137261 0.66 0.949339
Target:  5'- cGAGC-CGAGUgugCGGCGGcggggcucggccgcGCGCGUu- -3'
miRNA:   3'- aUUUGaGCUCGa--GCCGCC--------------UGCGCAuc -5'
7821 3' -54.7 NC_001973.1 + 132554 0.76 0.474848
Target:  5'- cGGGCUCGAGCgCGGCGGugugGCGCGc-- -3'
miRNA:   3'- aUUUGAGCUCGaGCCGCC----UGCGCauc -5'
7821 3' -54.7 NC_001973.1 + 130947 1.02 0.010712
Target:  5'- cAAACUCGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 130867 1.08 0.004767
Target:  5'- cUAAACUCGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- -AUUUGAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 130770 1.06 0.006304
Target:  5'- cAAACUCGAGCUCGGCGGGCGCGUAGg -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCUGCGCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.