miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7821 3' -54.7 NC_001973.1 + 130691 1.08 0.004767
Target:  5'- cUAAACUCGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- -AUUUGAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 130613 0.99 0.019211
Target:  5'- cUAAAC-CGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- -AUUUGaGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 130535 0.94 0.03833
Target:  5'- cUAAAC-CGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- -AUUUGaGCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 130472 0.7 0.802842
Target:  5'- cGAACgCGAGUUguaguuauaGCGGACGCGUAGg -3'
miRNA:   3'- aUUUGaGCUCGAgc-------CGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 129298 1.07 0.005331
Target:  5'- cAAACUCGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 129221 1.02 0.010712
Target:  5'- cAAACUCGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 129139 0.94 0.03833
Target:  5'- -cGACUugaaCGAGCUCGGCGGACGCGUAGg -3'
miRNA:   3'- auUUGA----GCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 128976 0.89 0.086607
Target:  5'- cAAACUCGAGCUCGGCcaACGCGUAGg -3'
miRNA:   3'- aUUUGAGCUCGAGCCGccUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 127585 0.88 0.088955
Target:  5'- cAAGCUCGAGCUCGGCGGuCGCcUAGa -3'
miRNA:   3'- aUUUGAGCUCGAGCCGCCuGCGcAUC- -5'
7821 3' -54.7 NC_001973.1 + 127507 0.95 0.034336
Target:  5'- cUAAACU-GAGCUCGGCGGGCGCGUAGg -3'
miRNA:   3'- -AUUUGAgCUCGAGCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 127428 1.03 0.009582
Target:  5'- cUAAACUCGAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- -AUUUGAGCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 127351 0.91 0.057767
Target:  5'- cUAAACU-GAGCUCGGCGGACGCGUAa -3'
miRNA:   3'- -AUUUGAgCUCGAGCCGCCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 126041 0.74 0.583798
Target:  5'- uUGAAUUUGAGCUCuGCcGACGCGUAa -3'
miRNA:   3'- -AUUUGAGCUCGAGcCGcCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 124188 0.66 0.937041
Target:  5'- ---cCUCGAGCgcgaggucgCGGCGG-CGCGc-- -3'
miRNA:   3'- auuuGAGCUCGa--------GCCGCCuGCGCauc -5'
7821 3' -54.7 NC_001973.1 + 122429 0.66 0.937041
Target:  5'- -cGACUCGAGCUCGuuGCGG-CGa-UAGu -3'
miRNA:   3'- auUUGAGCUCGAGC--CGCCuGCgcAUC- -5'
7821 3' -54.7 NC_001973.1 + 121696 0.7 0.811733
Target:  5'- --uACgCGAGCUCGGCGGcgGCGuCGUc- -3'
miRNA:   3'- auuUGaGCUCGAGCCGCC--UGC-GCAuc -5'
7821 3' -54.7 NC_001973.1 + 121307 0.66 0.941799
Target:  5'- -cGGCgCGcGC-CGGCGGACGCGc-- -3'
miRNA:   3'- auUUGaGCuCGaGCCGCCUGCGCauc -5'
7821 3' -54.7 NC_001973.1 + 120375 0.67 0.909622
Target:  5'- aAGACggCGAGUUUGGCGGG-GCGa-- -3'
miRNA:   3'- aUUUGa-GCUCGAGCCGCCUgCGCauc -5'
7821 3' -54.7 NC_001973.1 + 117502 0.68 0.876252
Target:  5'- -uGGCUUuGGCcgcCGGCGG-CGCGUAGa -3'
miRNA:   3'- auUUGAGcUCGa--GCCGCCuGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 106677 0.67 0.915004
Target:  5'- --cGCUCGAcgaucucgacgucGCuUUGGCGGGCGCGc-- -3'
miRNA:   3'- auuUGAGCU-------------CG-AGCCGCCUGCGCauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.