Results 41 - 60 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7821 | 3' | -54.7 | NC_001973.1 | + | 96886 | 0.68 | 0.896972 |
Target: 5'- cGGAUcUGuGCgCGGCGGGCGCGUcGGa -3' miRNA: 3'- aUUUGaGCuCGaGCCGCCUGCGCA-UC- -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 96039 | 0.86 | 0.125502 |
Target: 5'- cGAGCUCGGGCUgGGCGGucuguuCGCGUGGg -3' miRNA: 3'- aUUUGAGCUCGAgCCGCCu-----GCGCAUC- -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 95969 | 0.66 | 0.941799 |
Target: 5'- -----aCGAGa-CGGCGGGCGCGcUGGu -3' miRNA: 3'- auuugaGCUCgaGCCGCCUGCGC-AUC- -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 89105 | 0.72 | 0.655805 |
Target: 5'- ----gUCGAGCUCcGCGGGCGCGc-- -3' miRNA: 3'- auuugAGCUCGAGcCGCCUGCGCauc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 83950 | 0.66 | 0.932042 |
Target: 5'- --cGCUCG-Ga--GGCGGGCGCGUcgAGg -3' miRNA: 3'- auuUGAGCuCgagCCGCCUGCGCA--UC- -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 77014 | 0.66 | 0.937041 |
Target: 5'- ----gUCGGGCggCGGCGGcGCGCGc-- -3' miRNA: 3'- auuugAGCUCGa-GCCGCC-UGCGCauc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 74211 | 0.68 | 0.890294 |
Target: 5'- -----aCGAGCUCGGCgucGGAgGCGUu- -3' miRNA: 3'- auuugaGCUCGAGCCG---CCUgCGCAuc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 72466 | 0.9 | 0.066161 |
Target: 5'- -uAAC-CGAGCUCGGCGGACGCGUAa -3' miRNA: 3'- auUUGaGCUCGAGCCGCCUGCGCAUc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 72360 | 0.88 | 0.091364 |
Target: 5'- -uAACUCGAGCUCGGCcGACGCGUAa -3' miRNA: 3'- auUUGAGCUCGAGCCGcCUGCGCAUc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 72282 | 1 | 0.016721 |
Target: 5'- -uAACUCGAGCUCGGCGGACGCGUAa -3' miRNA: 3'- auUUGAGCUCGAGCCGCCUGCGCAUc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 72202 | 0.92 | 0.049051 |
Target: 5'- cUGAAgUUGAGCUCGGCGGACGCGUAa -3' miRNA: 3'- -AUUUgAGCUCGAGCCGCCUGCGCAUc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 72117 | 1.04 | 0.008334 |
Target: 5'- -uAACUCGAGCUCGGCGGACGCGUAGg -3' miRNA: 3'- auUUGAGCUCGAGCCGCCUGCGCAUC- -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 72022 | 1 | 0.016263 |
Target: 5'- -cAACUCGAGCUCGGCGGACGCGUAa -3' miRNA: 3'- auUUGAGCUCGAGCCGCCUGCGCAUc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 71935 | 1 | 0.016721 |
Target: 5'- -uAACUCGAGCUCGGCGGACGCGUAa -3' miRNA: 3'- auUUGAGCUCGAGCCGCCUGCGCAUc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 71779 | 0.68 | 0.896972 |
Target: 5'- cGAGCUCGAgGC-CGGCGG-CGCc--- -3' miRNA: 3'- aUUUGAGCU-CGaGCCGCCuGCGcauc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 67448 | 0.71 | 0.716861 |
Target: 5'- cGGGCacCGGGCUC-GCGGACGCGUc- -3' miRNA: 3'- aUUUGa-GCUCGAGcCGCCUGCGCAuc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 62933 | 0.66 | 0.941799 |
Target: 5'- -cGACUCGGGC-CGGCGu-CGUcaGUAGa -3' miRNA: 3'- auUUGAGCUCGaGCCGCcuGCG--CAUC- -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 62576 | 0.71 | 0.716861 |
Target: 5'- aGGGCUCGAGCg-GGCGcagcGACGCGUc- -3' miRNA: 3'- aUUUGAGCUCGagCCGC----CUGCGCAuc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 61194 | 0.67 | 0.91559 |
Target: 5'- cUGAACgCGcGCUCgGGCGGGCGCc--- -3' miRNA: 3'- -AUUUGaGCuCGAG-CCGCCUGCGcauc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 60440 | 0.66 | 0.946317 |
Target: 5'- -cAGCUCGAGC-CGcagcaguacGUGGACGCGc-- -3' miRNA: 3'- auUUGAGCUCGaGC---------CGCCUGCGCauc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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