Results 81 - 98 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7821 | 3' | -54.7 | NC_001973.1 | + | 21156 | 1.03 | 0.009582 |
Target: 5'- --cGCUCGAGCUCGGCGGACGCGUAGg -3' miRNA: 3'- auuUGAGCUCGAGCCGCCUGCGCAUC- -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 21056 | 1.07 | 0.005637 |
Target: 5'- cGAGCUCGAGCUCGGCGGGCGCGUAGg -3' miRNA: 3'- aUUUGAGCUCGAGCCGCCUGCGCAUC- -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 20957 | 0.96 | 0.028308 |
Target: 5'- gUAAACU-GAGCUCGGCGGACGCGUAGg -3' miRNA: 3'- -AUUUGAgCUCGAGCCGCCUGCGCAUC- -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 20471 | 0.66 | 0.946317 |
Target: 5'- --uACUCGccCUCGGCGcACaGCGUGGg -3' miRNA: 3'- auuUGAGCucGAGCCGCcUG-CGCAUC- -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 16513 | 0.99 | 0.019211 |
Target: 5'- --cGCUCGAGCUCGGCGGACGCGUAa -3' miRNA: 3'- auuUGAGCUCGAGCCGCCUGCGCAUc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 16435 | 0.99 | 0.019211 |
Target: 5'- --cGCUCGAGCUCGGCGGACGCGUAa -3' miRNA: 3'- auuUGAGCUCGAGCCGCCUGCGCAUc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 16354 | 1.08 | 0.004767 |
Target: 5'- cUAAACUCGAGCUCGGCGGACGCGUAGg -3' miRNA: 3'- -AUUUGAGCUCGAGCCGCCUGCGCAUC- -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 12420 | 0.93 | 0.04644 |
Target: 5'- cAAACUUGAGCUCGGCuGACGCGUAGg -3' miRNA: 3'- aUUUGAGCUCGAGCCGcCUGCGCAUC- -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 12342 | 1.07 | 0.005331 |
Target: 5'- cAAACUCGAGCUCGGCGGACGCGUAGg -3' miRNA: 3'- aUUUGAGCUCGAGCCGCCUGCGCAUC- -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 12263 | 0.88 | 0.096369 |
Target: 5'- cUAAAC-CcAGCUCGGCGGACGCGUAGg -3' miRNA: 3'- -AUUUGaGcUCGAGCCGCCUGCGCAUC- -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 12185 | 0.96 | 0.029101 |
Target: 5'- cUAAACU-GAGCUCGGCGGACGCGUAGg -3' miRNA: 3'- -AUUUGAgCUCGAGCCGCCUGCGCAUC- -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 12107 | 1.07 | 0.005331 |
Target: 5'- cAAACUCGAGCUCGGCGGACGCGUAGg -3' miRNA: 3'- aUUUGAGCUCGAGCCGCCUGCGCAUC- -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 9683 | 0.66 | 0.950599 |
Target: 5'- ---cCUCG-GCgaaCGGCGG-CGCGUAc -3' miRNA: 3'- auuuGAGCuCGa--GCCGCCuGCGCAUc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 7437 | 0.74 | 0.54326 |
Target: 5'- aGGACUCgcacguGAGCUCGGCGGugcgGCGCGa-- -3' miRNA: 3'- aUUUGAG------CUCGAGCCGCC----UGCGCauc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 7260 | 0.68 | 0.868897 |
Target: 5'- --uGCgcagCGGGCUCGGCGcgcGGCGCGc-- -3' miRNA: 3'- auuUGa---GCUCGAGCCGC---CUGCGCauc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 2872 | 0.71 | 0.726833 |
Target: 5'- ---cUUUGAucacGCUCGGCGGACGCGc-- -3' miRNA: 3'- auuuGAGCU----CGAGCCGCCUGCGCauc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 2799 | 0.92 | 0.050409 |
Target: 5'- ----aUUGAGCUCGGCGGACGCGUAGg -3' miRNA: 3'- auuugAGCUCGAGCCGCCUGCGCAUC- -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 2677 | 0.92 | 0.053236 |
Target: 5'- cGAGCUCGAGCUCGGCcGACGCGUAa -3' miRNA: 3'- aUUUGAGCUCGAGCCGcCUGCGCAUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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