miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7821 3' -54.7 NC_001973.1 + 62933 0.66 0.941799
Target:  5'- -cGACUCGGGC-CGGCGu-CGUcaGUAGa -3'
miRNA:   3'- auUUGAGCUCGaGCCGCcuGCG--CAUC- -5'
7821 3' -54.7 NC_001973.1 + 20471 0.66 0.946317
Target:  5'- --uACUCGccCUCGGCGcACaGCGUGGg -3'
miRNA:   3'- auuUGAGCucGAGCCGCcUG-CGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 60440 0.66 0.946317
Target:  5'- -cAGCUCGAGC-CGcagcaguacGUGGACGCGc-- -3'
miRNA:   3'- auUUGAGCUCGaGC---------CGCCUGCGCauc -5'
7821 3' -54.7 NC_001973.1 + 137261 0.66 0.949339
Target:  5'- cGAGC-CGAGUgugCGGCGGcggggcucggccgcGCGCGUu- -3'
miRNA:   3'- aUUUGaGCUCGa--GCCGCC--------------UGCGCAuc -5'
7821 3' -54.7 NC_001973.1 + 9683 0.66 0.950599
Target:  5'- ---cCUCG-GCgaaCGGCGG-CGCGUAc -3'
miRNA:   3'- auuuGAGCuCGa--GCCGCCuGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 61194 0.67 0.91559
Target:  5'- cUGAACgCGcGCUCgGGCGGGCGCc--- -3'
miRNA:   3'- -AUUUGaGCuCGAG-CCGCCUGCGcauc -5'
7821 3' -54.7 NC_001973.1 + 106677 0.67 0.915004
Target:  5'- --cGCUCGAcgaucucgacgucGCuUUGGCGGGCGCGc-- -3'
miRNA:   3'- auuUGAGCU-------------CG-AGCCGCCUGCGCauc -5'
7821 3' -54.7 NC_001973.1 + 159050 0.69 0.853545
Target:  5'- ----gUCGAGCU-GGuCGGACGCGgAGg -3'
miRNA:   3'- auuugAGCUCGAgCC-GCCUGCGCaUC- -5'
7821 3' -54.7 NC_001973.1 + 56557 0.69 0.853545
Target:  5'- cGAGCUCGAuaUCGGgcucuaugaCGGGCGCGg-- -3'
miRNA:   3'- aUUUGAGCUcgAGCC---------GCCUGCGCauc -5'
7821 3' -54.7 NC_001973.1 + 7260 0.68 0.868897
Target:  5'- --uGCgcagCGGGCUCGGCGcgcGGCGCGc-- -3'
miRNA:   3'- auuUGa---GCUCGAGCCGC---CUGCGCauc -5'
7821 3' -54.7 NC_001973.1 + 52809 0.68 0.868897
Target:  5'- cGAACUCGGGCUCGaGCGcGCuGuCGUAc -3'
miRNA:   3'- aUUUGAGCUCGAGC-CGCcUG-C-GCAUc -5'
7821 3' -54.7 NC_001973.1 + 117502 0.68 0.876252
Target:  5'- -uGGCUUuGGCcgcCGGCGG-CGCGUAGa -3'
miRNA:   3'- auUUGAGcUCGa--GCCGCCuGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 58034 0.68 0.876252
Target:  5'- cGAuCUCGGGCUcCGGCGG-CgGCGgcGg -3'
miRNA:   3'- aUUuGAGCUCGA-GCCGCCuG-CGCauC- -5'
7821 3' -54.7 NC_001973.1 + 53847 0.68 0.883386
Target:  5'- cGAGCUCGccccGGCggCGGCGGcgccgccgaGCGCGgcGg -3'
miRNA:   3'- aUUUGAGC----UCGa-GCCGCC---------UGCGCauC- -5'
7821 3' -54.7 NC_001973.1 + 74211 0.68 0.890294
Target:  5'- -----aCGAGCUCGGCgucGGAgGCGUu- -3'
miRNA:   3'- auuugaGCUCGAGCCG---CCUgCGCAuc -5'
7821 3' -54.7 NC_001973.1 + 159542 0.68 0.892993
Target:  5'- gAGAcCUCGAGCaggaucuccuccuccUCGGCGGAgGuCGUGc -3'
miRNA:   3'- aUUU-GAGCUCG---------------AGCCGCCUgC-GCAUc -5'
7821 3' -54.7 NC_001973.1 + 71779 0.68 0.896972
Target:  5'- cGAGCUCGAgGC-CGGCGG-CGCc--- -3'
miRNA:   3'- aUUUGAGCU-CGaGCCGCCuGCGcauc -5'
7821 3' -54.7 NC_001973.1 + 96886 0.68 0.896972
Target:  5'- cGGAUcUGuGCgCGGCGGGCGCGUcGGa -3'
miRNA:   3'- aUUUGaGCuCGaGCCGCCUGCGCA-UC- -5'
7821 3' -54.7 NC_001973.1 + 120375 0.67 0.909622
Target:  5'- aAGACggCGAGUUUGGCGGG-GCGa-- -3'
miRNA:   3'- aUUUGa-GCUCGAGCCGCCUgCGCauc -5'
7821 3' -54.7 NC_001973.1 + 146023 0.67 0.909622
Target:  5'- -cGGCUCGAGCgCGGgucgaCGGACGgGgcGa -3'
miRNA:   3'- auUUGAGCUCGaGCC-----GCCUGCgCauC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.