miRNA display CGI


Results 81 - 98 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7821 3' -54.7 NC_001973.1 + 55916 0.72 0.66608
Target:  5'- cGGGCUCGGGCUCGGgcuCGGGCucgaGUAGu -3'
miRNA:   3'- aUUUGAGCUCGAGCC---GCCUGcg--CAUC- -5'
7821 3' -54.7 NC_001973.1 + 31039 0.72 0.661973
Target:  5'- --uGCUCGAGCgucugaacgccgaCGGCGGGCaGCGUGc -3'
miRNA:   3'- auuUGAGCUCGa------------GCCGCCUG-CGCAUc -5'
7821 3' -54.7 NC_001973.1 + 89105 0.72 0.655805
Target:  5'- ----gUCGAGCUCcGCGGGCGCGc-- -3'
miRNA:   3'- auuugAGCUCGAGcCGCCUGCGCauc -5'
7821 3' -54.7 NC_001973.1 + 151303 0.74 0.594038
Target:  5'- uUGAAUUauaaUGAGCg-GGCGGACGUGUAGg -3'
miRNA:   3'- -AUUUGA----GCUCGagCCGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 126041 0.74 0.583798
Target:  5'- uUGAAUUUGAGCUCuGCcGACGCGUAa -3'
miRNA:   3'- -AUUUGAGCUCGAGcCGcCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 144723 0.72 0.696704
Target:  5'- aGGACaUCGAGCgccaggcggCGGCGGAgGCGgccgAGg -3'
miRNA:   3'- aUUUG-AGCUCGa--------GCCGCCUgCGCa---UC- -5'
7821 3' -54.7 NC_001973.1 + 62576 0.71 0.716861
Target:  5'- aGGGCUCGAGCg-GGCGcagcGACGCGUc- -3'
miRNA:   3'- aUUUGAGCUCGagCCGC----CUGCGCAuc -5'
7821 3' -54.7 NC_001973.1 + 7260 0.68 0.868897
Target:  5'- --uGCgcagCGGGCUCGGCGcgcGGCGCGc-- -3'
miRNA:   3'- auuUGa---GCUCGAGCCGC---CUGCGCauc -5'
7821 3' -54.7 NC_001973.1 + 56557 0.69 0.853545
Target:  5'- cGAGCUCGAuaUCGGgcucuaugaCGGGCGCGg-- -3'
miRNA:   3'- aUUUGAGCUcgAGCC---------GCCUGCGCauc -5'
7821 3' -54.7 NC_001973.1 + 159050 0.69 0.853545
Target:  5'- ----gUCGAGCU-GGuCGGACGCGgAGg -3'
miRNA:   3'- auuugAGCUCGAgCC-GCCUGCGCaUC- -5'
7821 3' -54.7 NC_001973.1 + 41113 0.69 0.832381
Target:  5'- cGAGCUCGAGUuuggucauuuaguugUCGGCGG-CgGCGgcGg -3'
miRNA:   3'- aUUUGAGCUCG---------------AGCCGCCuG-CGCauC- -5'
7821 3' -54.7 NC_001973.1 + 41783 0.69 0.82901
Target:  5'- --uGCcCGAGaaCGGCGGGCGCGagUGGg -3'
miRNA:   3'- auuUGaGCUCgaGCCGCCUGCGC--AUC- -5'
7821 3' -54.7 NC_001973.1 + 121696 0.7 0.811733
Target:  5'- --uACgCGAGCUCGGCGGcgGCGuCGUc- -3'
miRNA:   3'- auuUGaGCUCGAGCCGCC--UGC-GCAuc -5'
7821 3' -54.7 NC_001973.1 + 130472 0.7 0.802842
Target:  5'- cGAACgCGAGUUguaguuauaGCGGACGCGUAGg -3'
miRNA:   3'- aUUUGaGCUCGAgc-------CGCCUGCGCAUC- -5'
7821 3' -54.7 NC_001973.1 + 29968 0.7 0.802842
Target:  5'- gAGACgCcGGCUCGGUgguGGGCGCGUAu -3'
miRNA:   3'- aUUUGaGcUCGAGCCG---CCUGCGCAUc -5'
7821 3' -54.7 NC_001973.1 + 2872 0.71 0.726833
Target:  5'- ---cUUUGAucacGCUCGGCGGACGCGc-- -3'
miRNA:   3'- auuuGAGCU----CGAGCCGCCUGCGCauc -5'
7821 3' -54.7 NC_001973.1 + 67448 0.71 0.716861
Target:  5'- cGGGCacCGGGCUC-GCGGACGCGUc- -3'
miRNA:   3'- aUUUGa-GCUCGAGcCGCCUGCGCAuc -5'
7821 3' -54.7 NC_001973.1 + 52726 0.74 0.583798
Target:  5'- -cAGCUCGAGCgccaGGCGG-CGCGUc- -3'
miRNA:   3'- auUUGAGCUCGag--CCGCCuGCGCAuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.