Results 81 - 98 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7821 | 3' | -54.7 | NC_001973.1 | + | 55916 | 0.72 | 0.66608 |
Target: 5'- cGGGCUCGGGCUCGGgcuCGGGCucgaGUAGu -3' miRNA: 3'- aUUUGAGCUCGAGCC---GCCUGcg--CAUC- -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 31039 | 0.72 | 0.661973 |
Target: 5'- --uGCUCGAGCgucugaacgccgaCGGCGGGCaGCGUGc -3' miRNA: 3'- auuUGAGCUCGa------------GCCGCCUG-CGCAUc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 89105 | 0.72 | 0.655805 |
Target: 5'- ----gUCGAGCUCcGCGGGCGCGc-- -3' miRNA: 3'- auuugAGCUCGAGcCGCCUGCGCauc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 151303 | 0.74 | 0.594038 |
Target: 5'- uUGAAUUauaaUGAGCg-GGCGGACGUGUAGg -3' miRNA: 3'- -AUUUGA----GCUCGagCCGCCUGCGCAUC- -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 126041 | 0.74 | 0.583798 |
Target: 5'- uUGAAUUUGAGCUCuGCcGACGCGUAa -3' miRNA: 3'- -AUUUGAGCUCGAGcCGcCUGCGCAUc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 144723 | 0.72 | 0.696704 |
Target: 5'- aGGACaUCGAGCgccaggcggCGGCGGAgGCGgccgAGg -3' miRNA: 3'- aUUUG-AGCUCGa--------GCCGCCUgCGCa---UC- -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 62576 | 0.71 | 0.716861 |
Target: 5'- aGGGCUCGAGCg-GGCGcagcGACGCGUc- -3' miRNA: 3'- aUUUGAGCUCGagCCGC----CUGCGCAuc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 7260 | 0.68 | 0.868897 |
Target: 5'- --uGCgcagCGGGCUCGGCGcgcGGCGCGc-- -3' miRNA: 3'- auuUGa---GCUCGAGCCGC---CUGCGCauc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 56557 | 0.69 | 0.853545 |
Target: 5'- cGAGCUCGAuaUCGGgcucuaugaCGGGCGCGg-- -3' miRNA: 3'- aUUUGAGCUcgAGCC---------GCCUGCGCauc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 159050 | 0.69 | 0.853545 |
Target: 5'- ----gUCGAGCU-GGuCGGACGCGgAGg -3' miRNA: 3'- auuugAGCUCGAgCC-GCCUGCGCaUC- -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 41113 | 0.69 | 0.832381 |
Target: 5'- cGAGCUCGAGUuuggucauuuaguugUCGGCGG-CgGCGgcGg -3' miRNA: 3'- aUUUGAGCUCG---------------AGCCGCCuG-CGCauC- -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 41783 | 0.69 | 0.82901 |
Target: 5'- --uGCcCGAGaaCGGCGGGCGCGagUGGg -3' miRNA: 3'- auuUGaGCUCgaGCCGCCUGCGC--AUC- -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 121696 | 0.7 | 0.811733 |
Target: 5'- --uACgCGAGCUCGGCGGcgGCGuCGUc- -3' miRNA: 3'- auuUGaGCUCGAGCCGCC--UGC-GCAuc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 130472 | 0.7 | 0.802842 |
Target: 5'- cGAACgCGAGUUguaguuauaGCGGACGCGUAGg -3' miRNA: 3'- aUUUGaGCUCGAgc-------CGCCUGCGCAUC- -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 29968 | 0.7 | 0.802842 |
Target: 5'- gAGACgCcGGCUCGGUgguGGGCGCGUAu -3' miRNA: 3'- aUUUGaGcUCGAGCCG---CCUGCGCAUc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 2872 | 0.71 | 0.726833 |
Target: 5'- ---cUUUGAucacGCUCGGCGGACGCGc-- -3' miRNA: 3'- auuuGAGCU----CGAGCCGCCUGCGCauc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 67448 | 0.71 | 0.716861 |
Target: 5'- cGGGCacCGGGCUC-GCGGACGCGUc- -3' miRNA: 3'- aUUUGa-GCUCGAGcCGCCUGCGCAuc -5' |
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7821 | 3' | -54.7 | NC_001973.1 | + | 52726 | 0.74 | 0.583798 |
Target: 5'- -cAGCUCGAGCgccaGGCGG-CGCGUc- -3' miRNA: 3'- auUUGAGCUCGag--CCGCCuGCGCAuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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