miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7821 5' -52.6 NC_001973.1 + 2715 1.06 0.012007
Target:  5'- cGGCcGGGGUCGAUCGGGUUCAAGCCCg -3'
miRNA:   3'- -CCGaUCCCAGCUAGCUCAAGUUCGGG- -5'
7821 5' -52.6 NC_001973.1 + 2833 1.06 0.012007
Target:  5'- cGGCcGGGGUCGAUCGGGUUCAAGCCCg -3'
miRNA:   3'- -CCGaUCCCAGCUAGCUCAAGUUCGGG- -5'
7821 5' -52.6 NC_001973.1 + 10090 0.75 0.66033
Target:  5'- cGGUgAGGGgaUCGAUCGAGcaCGGGUCCa -3'
miRNA:   3'- -CCGaUCCC--AGCUAGCUCaaGUUCGGG- -5'
7821 5' -52.6 NC_001973.1 + 12146 0.9 0.110822
Target:  5'- uGCcGGGGUCaAUCGAGUUCGAGCCCg -3'
miRNA:   3'- cCGaUCCCAGcUAGCUCAAGUUCGGG- -5'
7821 5' -52.6 NC_001973.1 + 12223 1.07 0.009338
Target:  5'- cGGCcAGGGUCGAUCGAGUUCAAGCCCg -3'
miRNA:   3'- -CCGaUCCCAGCUAGCUCAAGUUCGGG- -5'
7821 5' -52.6 NC_001973.1 + 12301 0.84 0.269375
Target:  5'- cGGCcAGGGUCaAUCGAGUUCAAaCCCg -3'
miRNA:   3'- -CCGaUCCCAGcUAGCUCAAGUUcGGG- -5'
7821 5' -52.6 NC_001973.1 + 12380 0.9 0.116836
Target:  5'- cGGCaAGGGUCaAUCGAGUUCAAGCCg -3'
miRNA:   3'- -CCGaUCCCAGcUAGCUCAAGUUCGGg -5'
7821 5' -52.6 NC_001973.1 + 12458 1.07 0.009338
Target:  5'- cGGCcGGGGUCGAUCGAGUUCAAGCCCg -3'
miRNA:   3'- -CCGaUCCCAGCUAGCUCAAGUUCGGG- -5'
7821 5' -52.6 NC_001973.1 + 16393 1.16 0.002648
Target:  5'- cGGCUAGGGUCGAUCGAGUUCAAGCCCg -3'
miRNA:   3'- -CCGAUCCCAGCUAGCUCAAGUUCGGG- -5'
7821 5' -52.6 NC_001973.1 + 16471 0.96 0.047994
Target:  5'- cGGCcGGGGUCaAUCGAGUUCAAGCCCg -3'
miRNA:   3'- -CCGaUCCCAGcUAGCUCAAGUUCGGG- -5'
7821 5' -52.6 NC_001973.1 + 16549 1.16 0.002648
Target:  5'- cGGCUAGGGUCGAUCGAGUUCAAGCCCg -3'
miRNA:   3'- -CCGAUCCCAGCUAGCUCAAGUUCGGG- -5'
7821 5' -52.6 NC_001973.1 + 20995 1.05 0.013804
Target:  5'- cGGCUAGGGUCaAUCGAGUUCAAGCCCg -3'
miRNA:   3'- -CCGAUCCCAGcUAGCUCAAGUUCGGG- -5'
7821 5' -52.6 NC_001973.1 + 21094 0.96 0.047994
Target:  5'- cGGCcGGGGUCaAUCGAGUUCAAGCCCg -3'
miRNA:   3'- -CCGaUCCCAGcUAGCUCAAGUUCGGG- -5'
7821 5' -52.6 NC_001973.1 + 21192 1.06 0.012007
Target:  5'- cGGCcGGGGUCGAUCGGGUUCAAGCCCg -3'
miRNA:   3'- -CCGaUCCCAGCUAGCUCAAGUUCGGG- -5'
7821 5' -52.6 NC_001973.1 + 52192 0.67 0.978086
Target:  5'- cGGC-GGGGUCGcgCGAc-UCGAGCa- -3'
miRNA:   3'- -CCGaUCCCAGCuaGCUcaAGUUCGgg -5'
7821 5' -52.6 NC_001973.1 + 55923 0.77 0.537396
Target:  5'- gGGCUcGGGcUCGGgcUCGAGUaguacggacUCGGGCCCg -3'
miRNA:   3'- -CCGAuCCC-AGCU--AGCUCA---------AGUUCGGG- -5'
7821 5' -52.6 NC_001973.1 + 67814 0.69 0.939514
Target:  5'- uGGCc-GGGUCGGUCugcaccGAGUcgcugcUCuGGCCCa -3'
miRNA:   3'- -CCGauCCCAGCUAG------CUCA------AGuUCGGG- -5'
7821 5' -52.6 NC_001973.1 + 71972 0.75 0.680871
Target:  5'- cGGCgAGGGUCaAUCGAGUUCAAaUCUa -3'
miRNA:   3'- -CCGaUCCCAGcUAGCUCAAGUUcGGG- -5'
7821 5' -52.6 NC_001973.1 + 72059 0.96 0.047994
Target:  5'- cGGCgAGGGUCaAUCGAGUUCAAGCCCg -3'
miRNA:   3'- -CCGaUCCCAGcUAGCUCAAGUUCGGG- -5'
7821 5' -52.6 NC_001973.1 + 72154 0.74 0.721388
Target:  5'- cGGCaaaGGUCGAUCGAGUUCAAaUCUa -3'
miRNA:   3'- -CCGaucCCAGCUAGCUCAAGUUcGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.